DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2010965
GeneKdm4a
SynonymsD4Ertd222e
JHDM3A
Jmjd2
Jmjd2a
Descriptionlysine (K)-specific demethylase 4A
LocusNM_001161823 UCSC: chr4:117809609-117852648(-) OLP: chr4:117809609-117852648(-)
NM_172382 UCSC: chr4:117814648-117852648(-) OLP: chr4:117814648-117852648(-)
DB links


Entrez 230674
MGI 2446210
Ensembl ENSMUSG00000033326
Vega OTTMUSG00000008717
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.159
SPR
1.808
Oo
2.049
1C
1.509
2C
1.269
4C
1.175
ESC
1.293
MEF
1.952
p1C
1.15
p4C
1.032
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010965
(v2.0)		Kdm4aNM_001161823,NM_172382230674
13.423863.245111.06731.258917.57813.949418.636988.621813.13289.76369
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.099
H3.3
Rep.1
-0.13
H3.3
Rep.2
2.056
H3K4me3
Rep.1
1.185
H3K4me3
Rep.2
-1.883
H3K27me3
Rep.1
-1.958
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010965
(v2.0)		Kdm4a230674
463/3030.0986300/303-0.1301107/3032.0561275/3031.184719/303-1.8831117/303-1.9584
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.232
H3.3
Rep.1
-0.051
H3.3
Rep.2
2.872
H3K4me3
Rep.1
2.026
H3K4me3
Rep.2
-1.229
H3K27me3
Rep.1
-1.717
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010965
(v2.0)		Kdm4a230674
255/1520.2322159/152-0.050998/1522.8717249/1522.025515/152-1.229169/152-1.7169
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010965
(v2.0)		Kdm4a230674
91.716815858.05
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010965
(v2.0)		Kdm4a230674
10.30917413.93
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A