DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2011756
GeneLrrc47
Synonyms
Descriptionleucine rich repeat containing 47
LocusNM_201226 UCSC: chr4:153385912-153395621(+) OLP: chr4:153385912-153395621(+)
DB links


Entrez 72946
MGI 1920196
Ensembl ENSMUSG00000029028
Vega OTTMUSG00000010507
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.218
SPR
1.978
Oo
1.949
1C
1.646
2C
1.626
4C
1.119
ESC
1.183
MEF
1.974
p1C
1.585
p4C
1.151
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011756
(v2.0)		Lrrc47NM_20122672946
15.527593.964688.008943.242841.266412.154814.234793.249937.426213.1732
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.012
H3.3
Rep.1
-0.417
H3.3
Rep.2
1.458
H3K4me3
Rep.1
0.268
H3K4me3
Rep.2
-2.641
H3K27me3
Rep.1
-2.195
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011756
(v2.0)		Lrrc4772946
839/593-0.0122481/593-0.4174136/5931.458284/5930.268122/593-2.6406195/593-2.1952
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.263
H3.3
Rep.1
-0.177
H3.3
Rep.2
2.651
H3K4me3
Rep.1
1.426
H3K4me3
Rep.2
-3.558
H3K27me3
Rep.1
-2.002
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011756
(v2.0)		Lrrc4772946
413/2410.2633231/241-0.1766130/2412.6507259/2411.42584/241-3.557990/241-2.0023
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011756
(v2.0)		Lrrc4772946
107.54116465.57
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011756
(v2.0)		Lrrc4772946
25.96097534.61
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A