DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2011810
GeneLsm1
Synonyms
DescriptionLSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)
LocusNM_026032 UCSC: chr8:26896063-26914447(+) OLP: chr8:26896063-26914447(+)
DB links


Entrez 67207
MGI 1914457
Ensembl ENSMUSG00000037296
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
Log10 (FPKM+1)
0.549
SPR
0.773
Oo
0.97
1C
0.851
2C
0.779
4C
0.693
ESC
0.972
MEF
1.018
p1C
0.805
p4C
0.716
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011810
(v2.0)
Lsm1NM_02603267207
2.542694.930878.342326.088075.010263.926858.366829.42085.383724.19433
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.374
H3.3
Rep.1
0.303
H3.3
Rep.2
2.909
H3K4me3
Rep.1
1.735
H3K4me3
Rep.2
-2.647
H3K27me3
Rep.1
-2.151
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011810
(v2.0)
Lsm167207
668/3610.3741483/3610.3031230/3612.9093480/3611.735313/361-2.6473122/361-2.1507
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.706
H3.3
Rep.1
0.453
H3.3
Rep.2
4.08
H3K4me3
Rep.1
2.914
H3K4me3
Rep.2
-2.626
H3K27me3
Rep.1
-1.943
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2011810
(v2.0)
Lsm167207
350/1500.7059223/1500.4533225/1504.0802456/1502.91455/150-2.625658/150-1.9426
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011810
(v2.0)
Lsm167207
58.397614540.27
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2011810
(v2.0)
Lsm167207
21.703410620.47
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A