DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2012225
GeneMed13
SynonymsThrap1
Trap240
Descriptionmediator complex subunit 13
LocusNM_001080931 UCSC: chr11:86079217-86171027(-) OLP: chr11:86079217-86171027(-)
DB links


Entrez 327987
MGI 3029632
Ensembl ENSMUSG00000034297
Vega OTTMUSG00000001199
Featureprotein-coding
GO_BP
  •   8 Terms
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
      transcription initiation from RNA polymerase II promoter (GO:0006367)
      intracellular steroid hormone receptor signaling pathway (GO:0030518)
      androgen receptor signaling pathway (GO:0030521)
      positive regulation of transcription, DNA-templated (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.854
SPR
1.15
Oo
1.545
1C
1.824
2C
1.58
4C
0.729
ESC
1.442
MEF
1.437
p1C
1.537
p4C
0.691
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2012225
(v2.0)		Med13NM_001080931327987
6.1473513.132734.067565.659837.0564.3566626.6626.32633.42623.90882
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.359
H3.3
Rep.1
0.365
H3.3
Rep.2
2.258
H3K4me3
Rep.1
1.876
H3K4me3
Rep.2
0.126
H3K27me3
Rep.1
-0.512
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2012225
(v2.0)		Med13327987
628/3430.3588479/3430.3647139/3432.2581503/3431.87690/3430.1261364/343-0.5118
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.67
H3.3
Rep.1
0.4
H3.3
Rep.2
3.317
H3K4me3
Rep.1
2.69
H3K4me3
Rep.2
-1.73
H3K27me3
Rep.1
-1.363
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2012225
(v2.0)		Med13327987
305/1340.6698192/1340.4001119/1343.3168349/1342.68969/134-1.730578/134-1.363
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2012225
(v2.0)		Med13327987
39.275415026.18
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2012225
(v2.0)		Med13327987
6.45161135.71
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A