DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2014877
GeneOgfod1
Synonyms
Description2-oxoglutarate and iron-dependent oxygenase domain containing 1
LocusNM_177767 UCSC: chr8:96561098-96591822(+) OLP: chr8:96561098-96591822(+)
NM_001093757 UCSC: chr8:96561098-96591822(+) OLP: chr8:96561098-96591822(+)
DB links


Entrez 270086
MGI 2442978
Ensembl ENSMUSG00000033009
Vega OTTMUSG00000023230
Featureprotein-coding
GO_BP
GO_MF
  •   16 Terms
      sulfonate dioxygenase activity (GO:0000907)
      iron ion binding (GO:0005506)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      2,4-dichlorophenoxyacetate alpha-ketoglutarate dioxygenase activity (GO:0018602)
      procollagen-proline dioxygenase activity (GO:0019798)
      L-ascorbic acid binding (GO:0031418)
      peptidyl-proline dioxygenase activity (GO:0031543)
      peptidyl-proline 3-dioxygenase activity (GO:0031544)
      hypophosphite dioxygenase activity (GO:0034792)
      DNA-N1-methyladenine dioxygenase activity (GO:0043734)
      metal ion binding (GO:0046872)
      dioxygenase activity (GO:0051213)
      C-19 gibberellin 2-beta-dioxygenase activity (GO:0052634)
      C-20 gibberellin 2-beta-dioxygenase activity (GO:0052635)
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.609
SPR
0.657
Oo
0.873
1C
0.957
2C
1.091
4C
0.799
ESC
0.917
MEF
0.853
p1C
1.003
p4C
0.622
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2014877
(v2.0)		Ogfod1NM_001093757,NM_177767270086
3.06423.539516.465058.0579911.32175.291147.257646.134799.07753.18742
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.099
H3.3
Rep.1
-0.025
H3.3
Rep.2
3.003
H3K4me3
Rep.1
2.382
H3K4me3
Rep.2
-1.946
H3K27me3
Rep.1
-1.819
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014877
(v2.0)		Ogfod1270086
680/4450.0987474/445-0.0251301/4453.003926/4452.381927/445-1.946190/445-1.8189
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.48
H3.3
Rep.1
0.278
H3.3
Rep.2
4.243
H3K4me3
Rep.1
3.579
H3K4me3
Rep.2
-1.562
H3K27me3
Rep.1
-1.438
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2014877
(v2.0)		Ogfod1270086
335/1680.4805221/1680.2779280/1684.2426809/1683.579313/168-1.562593/168-1.4378
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014877
(v2.0)		Ogfod1270086
54.857714837.07
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2014877
(v2.0)		Ogfod1270086
20.949811218.71
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A