DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2016041
GeneOpa1
Synonymslilr3
Descriptionoptic atrophy 1
LocusNM_133752 UCSC: chr16:29579420-29654688(+) OLP: chr16:29579420-29654688(+)
NM_001199177 UCSC: chr16:29579420-29654688(+) OLP: chr16:29579420-29654688(+)
DB links


Entrez 74143
MGI 1921393
Ensembl ENSMUSG00000038084
Vega OTTMUSG00000031484
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.972
SPR
1.277
Oo
1.572
1C
1.225
2C
1.111
4C
0.902
ESC
1.094
MEF
1.439
p1C
1.027
p4C
0.832
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016041
(v2.0)		Opa1NM_001199177,NM_13375274143
8.3829217.932536.337215.789311.92196.9721511.42126.46249.63125.78918
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.3
H3.3
Rep.1
0.283
H3.3
Rep.2
2.333
H3K4me3
Rep.1
1.302
H3K4me3
Rep.2
1.44
H3K27me3
Rep.1
0.714
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016041
(v2.0)		Opa174143
478/2720.2996359/2720.2832117/2722.3333268/2721.302179/2721.4403677/2720.7141
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.234
H3.3
Rep.1
0.089
H3.3
Rep.2
3.13
H3K4me3
Rep.1
1.997
H3K4me3
Rep.2
0.72
H3K27me3
Rep.1
-0.287
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016041
(v2.0)		Opa174143
252/1500.2342173/1500.089116/1503.1304241/1501.997360/1500.7202186/150-0.2869
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016041
(v2.0)		Opa174143
40.81349941.23
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016041
(v2.0)		Opa174143
13.13767018.77
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015575
(v1.0)		19360L0266H12-3Opa174143
U043512NAP093625-001Opa1;TC925661,TC925659,TC925657,TC925656P58281U,F,22.80233.11512.75482.71872.60412.90363.1075
MOE430 N/A
Agilent44K N/A
Proteome N/A