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DB status: OK
Last modified: 2024/03/24

Gene Search:

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DBTMEE:2016176

Gene	Pabpn1
Synonyms	Pabp3 poly(A) binding protein II
Description	poly(A) binding protein, nuclear 1
Locus	NM_019402 UCSC: chr14:55512980-55517764(+) OLP: chr14:55512980-55517764(+)
DB links	Entrez 54196 MGI 1859158
Feature	protein-coding
GO_BP	3 Terms mRNA polyadenylation (GO:0006378) mRNA processing (GO:0006397) poly(A)+ mRNA export from nucleus (GO:0016973)
GO_MF	5 Terms nucleotide binding (GO:0000166) nucleic acid binding (GO:0003676) RNA binding (GO:0003723) poly(A) binding (GO:0008143) poly(A) RNA binding (GO:0044822)
GO_CC	3 Terms nucleus (GO:0005634) cytoplasm (GO:0005737) ribonucleoprotein complex (GO:0030529)
KEGG	1 Terms mRNA surveillance pathway (mmu03015)
Ver2_FPKM	DBTMEE Gene RefSeq Entrez SPR_FPKM Oo_FPKM 1C_FPKM 2C_FPKM 4C_FPKM ESC_FPKM MEF_FPKM p1C_FPKM p4C_FPKM iPSC_FPKM 2016176 (v2.0) Pabpn1 NM_019402 54196 73.248 76.4071 218.724 215.395 196.206 143.968 50.2058 232.318 193.617 160.995
SPR_Histone_Erkek_5KaroundTSS	DBTMEE Gene Entrez H3.3_1_ChIP/Input H3.3_1(Enrich; log2) H3.3_2_ChIP/Input H3.3_2(Enrich; log2) H3K4me3_1_ChIP/Input H3K4me3_1(Enrich; log2) H3K4me3_2_ChIP/Input H3K4me3_2(Enrich; log2) H3K27me3_1_ChIP/Input H3K27me3_1(Enrich; log2) H3K27me3_2_ChIP/Input H3K27me3_2(Enrich; log2) 2016176 (v2.0) Pabpn1 54196 782/378 0.5348 530/378 0.3705 828/378 4.6885 2847/378 4.2352 23/378 -1.9353 161/378 -1.821
SPR_Histone_Erkek_2KaroundTSS	DBTMEE Gene Entrez H3.3_1_ChIP/Input H3.3_1(Enrich; log2) H3.3_2_ChIP/Input H3.3_2(Enrich; log2) H3K4me3_1_ChIP/Input H3K4me3_1(Enrich; log2) H3K4me3_2_ChIP/Input H3K4me3_2(Enrich; log2) H3K27me3_1_ChIP/Input H3K27me3_1(Enrich; log2) H3K27me3_2_ChIP/Input H3K27me3_2(Enrich; log2) 2016176 (v2.0) Pabpn1 54196 380/186 0.5156 256/186 0.343 651/186 5.3195 1955/186 4.7064 8/186 -2.3434 58/186 -2.2511
SPR_Methy_Kobayashi_5KaroundTSS	DBTMEE Gene Entrez Total_mC_levels Number_of_mCs Averaged_Methylation_level 2016176 (v2.0) Pabpn1 54196 75.7068 150 50.47
SPR_Methy_Kobayashi_2KaroundTSS	DBTMEE Gene Entrez Total_mC_levels Number_of_mCs Averaged_Methylation_level 2016176 (v2.0) Pabpn1 54196 29.6626 95 31.22
SOLiD_OocyteTo4C_FPKM_gene_guided	N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided	N/A
SOLiD_Partheno1C_FPKM_gene_guided	N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided	N/A
SOLiD_Partheno4C_FPKM_gene_guided	N/A
Illumina_Oo_2C_FPKM_gene_guided	N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided	N/A
NIA60mer	DBTMEE Array_Feature_Number Oligo_Parent_Clone Unigene Gene Entrez U_Cluster NAP_Cluster Gene_U/NAP TIGR SwissProt EST Oo 1C 2C 4C 8C Morula Blastocyst 11481 H3116G04-3 Mm.7723 PABPN1 U041309 NAP032531-1 TC909052 O35935 U,F,2 4.2298 4.1321 3.9002 4.0392 4.2758 4.068 4.2226 0015709 (v1.0) 13790 J0205D03-3 Mm.205791 Pabpn1 54196 U015637 NAP008545-001 Pabpn1; TC909058,TC909056,TC909054,TC909052,TC909050 O35935 U,F,2 4.8618 4.6481 4.487 5.0632 4.0686 4.4946 4.4534
MOE430	N/A
Agilent44K	N/A
Proteome	N/A