DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2016190
GenePaf1
Synonyms
DescriptionPaf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
LocusNM_019458 UCSC: chr7:29178015-29184402(+) OLP: chr7:29178015-29184402(+)
DB links


Entrez 54624
MGI 1923988
Ensembl ENSMUSG00000003437
Vega OTTMUSG00000023577
Featureprotein-coding
GO_BP
  •   14 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      endodermal cell fate commitment (GO:0001711)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      mRNA polyadenylation (GO:0006378)
      histone monoubiquitination (GO:0010390)
      Wnt signaling pathway (GO:0016055)
      stem cell maintenance (GO:0019827)
      positive regulation of mRNA 3'-end processing (GO:0031442)
      positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
      histone H2B ubiquitination (GO:0033523)
      negative regulation of myeloid cell differentiation (GO:0045638)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      cellular response to lipopolysaccharide (GO:0071222)
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016190
(v2.0)		Paf1NM_01945854624
27.179533.64119.7224267.780646.392321.837712.662110.643235.054723.6334
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016190
(v2.0)		Paf154624
661/4340.0939375/434-0.3262177/4342.2755591/4341.770810/434-3.258196/434-2.7567
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016190
(v2.0)		Paf154624
298/1700.2954160/170-0.2024151/1703.3401467/1702.77114/170-3.064642/170-2.5738
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016190
(v2.0)		Paf154624
67.748914447.05
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016190
(v2.0)		Paf154624
21.60389522.74
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A