DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2017072
GenePolr2e
Synonyms25kDa
RPB5
XAP4
Descriptionpolymerase (RNA) II (DNA directed) polypeptide E
LocusNM_025554 UCSC: chr10:79498698-79502404(-) OLP: chr10:79498698-79502404(-)
DB links


Entrez 66420
MGI 1913670
Ensembl ENSMUSG00000004667
Vega OTTMUSG00000019133
Featureprotein-coding
GO_BP
  •   2 Terms
      transcription, DNA-templated (GO:0006351)
      transcription from RNA polymerase II promoter (GO:0006366)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.783
SPR
1.89
Oo
1.608
1C
2.26
2C
2.42
4C
2.555
ESC
1.765
MEF
1.888
p1C
2.402
p4C
2.598
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017072
(v2.0)		Polr2eNM_02555466420
59.688476.605939.5494181.136262.207358.21857.186676.1937251.194394.901
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.008
H3.3
Rep.1
-0.624
H3.3
Rep.2
1.44
H3K4me3
Rep.1
0.919
H3K4me3
Rep.2
-3.144
H3K27me3
Rep.1
-2.892
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2017072
(v2.0)		Polr2e66420
725/511-0.0081359/511-0.624116/5111.4404385/5110.919513/511-3.1437103/511-2.8918
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
-0.088
H3.3
Rep.1
-0.482
H3.3
Rep.2
2.498
H3K4me3
Rep.1
1.964
H3K4me3
Rep.2
-3.179
H3K27me3
Rep.1
-2.713
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2017072
(v2.0)		Polr2e66420
298/222-0.0877172/222-0.4818108/2222.4981347/2221.96365/222-3.178550/222-2.7133
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2017072
(v2.0)		Polr2e66420
104.50516065.32
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2017072
(v2.0)		Polr2e66420
28.00177835.9
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0016586
(v1.0)		4979G0117E12-3Mm.18579Polr2e66420
U031999NAP007135-001Polr2e;TC881262,TC825491,TC825483Q9D538U,F,23.44723.61173.98014.46324.36044.42264.2693
MOE430 N/A
Agilent44K N/A
Proteome N/A