DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2017315
GenePrdm4
SynonymsSC-1
DescriptionPR domain containing 4
LocusNM_181650 UCSC: chr10:85354713-85379690(-) OLP: chr10:85354713-85379690(-)
DB links


Entrez 72843
MGI 1920093
Ensembl ENSMUSG00000035529
Featureprotein-coding
GO_BP
GO_MF
  •   69 Terms
      rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179)
      nucleic acid binding (GO:0003676)
      DNA binding (GO:0003677)
      protein C-terminal carboxyl O-methyltransferase activity (GO:0003880)
      tRNA (guanine-N2-)-methyltransferase activity (GO:0004809)
      death receptor binding (GO:0005123)
      methyltransferase activity (GO:0008168)
      C-methyltransferase activity (GO:0008169)
      N-methyltransferase activity (GO:0008170)
      O-methyltransferase activity (GO:0008171)
      S-methyltransferase activity (GO:0008172)
      RNA methyltransferase activity (GO:0008173)
      mRNA methyltransferase activity (GO:0008174)
      tRNA methyltransferase activity (GO:0008175)
      protein methyltransferase activity (GO:0008276)
      2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity (GO:0008425)
      rRNA methyltransferase activity (GO:0008649)
      rRNA (uridine-2'-O-)-methyltransferase activity (GO:0008650)
      rRNA (adenine-N6-)-methyltransferase activity (GO:0008988)
      DNA-methyltransferase activity (GO:0009008)
      tRNA (guanine-N1-)-methyltransferase activity (GO:0009019)
      rRNA (cytosine-C5-)-methyltransferase activity (GO:0009383)
      selenocysteine methyltransferase activity (GO:0016205)
      arginine N-methyltransferase activity (GO:0016273)
      protein-arginine N-methyltransferase activity (GO:0016274)
      lysine N-methyltransferase activity (GO:0016278)
      protein-lysine N-methyltransferase activity (GO:0016279)
      tRNA (uracil) methyltransferase activity (GO:0016300)
      tRNA (guanine) methyltransferase activity (GO:0016423)
      tRNA (adenine) methyltransferase activity (GO:0016426)
      tRNA (cytosine) methyltransferase activity (GO:0016427)
      tRNA (cytosine-5-)-methyltransferase activity (GO:0016428)
      tRNA (adenine-N1-)-methyltransferase activity (GO:0016429)
      rRNA (adenine) methyltransferase activity (GO:0016433)
      rRNA (cytosine) methyltransferase activity (GO:0016434)
      rRNA (guanine) methyltransferase activity (GO:0016435)
      rRNA (uridine) methyltransferase activity (GO:0016436)
      transferase activity (GO:0016740)
      protein C-terminal leucine carboxyl O-methyltransferase activity (GO:0018423)
      1-phenanthrol methyltransferase activity (GO:0018707)
      protein-arginine N5-methyltransferase activity (GO:0019702)
      methylarsonite methyltransferase activity (GO:0030792)
      dimethylarsinite methyltransferase activity (GO:0034541)
      4,5-dihydroxybenzo(a)pyrene methyltransferase activity (GO:0034807)
      1-hydroxypyrene methyltransferase activity (GO:0034931)
      1-hydroxy-6-methoxypyrene methyltransferase activity (GO:0034933)
      demethylmenaquinone methyltransferase activity (GO:0043770)
      cobalt-precorrin-6B C5-methyltransferase activity (GO:0043776)
      cobalt-precorrin-7 C15-methyltransferase activity (GO:0043777)
      cobalt-precorrin-5B C1-methyltransferase activity (GO:0043780)
      cobalt-precorrin-3 C17-methyltransferase activity (GO:0043782)
      dimethylamine methyltransferase activity (GO:0043791)
      hydroxyneurosporene-O-methyltransferase activity (GO:0043803)
      tRNA (adenine-57, 58-N(1)-) methyltransferase activity (GO:0043827)
      methylamine-specific methylcobalamin:coenzyme M methyltransferase activity (GO:0043833)
      trimethylamine methyltransferase activity (GO:0043834)
      methanol-specific methylcobalamin:coenzyme M methyltransferase activity (GO:0043851)
      monomethylamine methyltransferase activity (GO:0043852)
      metal ion binding (GO:0046872)
      P-methyltransferase activity (GO:0051994)
      Se-methyltransferase activity (GO:0051995)
      2-phytyl-1,4-naphthoquinone methyltransferase activity (GO:0052624)
      tRNA (uracil-2'-O-)-methyltransferase activity (GO:0052665)
      tRNA (cytosine-2'-O-)-methyltransferase activity (GO:0052666)
      phosphomethylethanolamine N-methyltransferase activity (GO:0052667)
      tRNA (cytosine-3-)-methyltransferase activity (GO:0052735)
      rRNA (cytosine-2'-O-)-methyltransferase activity (GO:0070677)
      rRNA (cytosine-N4-)-methyltransferase activity (GO:0071424)
      trihydroxyferuloyl spermidine O-methyltransferase activity (GO:0080012)
GO_CC
KEGG
  •   1 Terms
      Neurotrophin signaling pathway (mmu04722)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017315
(v2.0)		Prdm4NM_18165072843
7.541336.033823.358282.352943.29748.7105211.518520.372240.95319.67428
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2017315
(v2.0)		Prdm472843
737/4210.2944518/4210.1825103/4211.5428346/4211.0438117/4210.2086771/4210.273
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2017315
(v2.0)		Prdm472843
390/1620.7511232/1620.399891/1622.6806284/1622.12433/162-0.2312204/162-0.265
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2017315
(v2.0)		Prdm472843
46.009811739.32
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2017315
(v2.0)		Prdm472843
9.6257812.34
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A