DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2017577
GenePsip1
SynonymsPsip2
DescriptionPC4 and SFRS1 interacting protein 1
LocusNM_133948 UCSC: chr4:83101585-83132352(-) OLP: chr4:83101585-83132352(-)
NM_001290527 UCSC: chr4:83107783-83132352(-) OLP: chr4:83107783-83132352(-)
DB links


Entrez 101739
MGI 2142116
Ensembl ENSMUSG00000028484
Vega OTTMUSG00000000034
Featureprotein-coding
GO_BP
  •   7 Terms
      mRNA 5'-splice site recognition (GO:0000395)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      response to oxidative stress (GO:0006979)
      response to heat (GO:0009408)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.02
SPR
2.005
Oo
2.283
1C
2.196
2C
1.668
4C
1.871
ESC
1.715
MEF
2.182
p1C
1.732
p4C
1.843
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017577
(v2.0)		Psip1NM_001290527,NM_133948101739
9.47415100.149191.018156.16245.514173.355650.8243150.99852.931868.6771
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.66
H3.3
Rep.1
0.533
H3.3
Rep.2
3.345
H3K4me3
Rep.1
2.264
H3K4me3
Rep.2
-1.448
H3K27me3
Rep.1
-1.025
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2017577
(v2.0)		Psip1101739
709/3140.6605493/3140.5332272/3143.3445603/3142.263627/314-1.4485233/314-1.025
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
1.041
H3.3
Rep.1
0.744
H3.3
Rep.2
4.476
H3K4me3
Rep.1
3.381
H3K4me3
Rep.2
-2.052
H3K27me3
Rep.1
-1.208
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2017577
(v2.0)		Psip1101739
395/1341.0413244/1340.7441267/1344.476564/1343.38057/134-2.052487/134-1.2083
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2017577
(v2.0)		Psip1101739
50.907112042.42
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2017577
(v2.0)		Psip1101739
17.14668520.17
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A