DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2017929
GeneRae1
Synonyms41
D2Ertd342e
MNRP
MNRP41
DescriptionRAE1 RNA export 1 homolog (S. pombe)
LocusNM_175112 UCSC: chr2:172825618-172841240(+) OLP: chr2:172825618-172841240(+)
DB links


Entrez 66679
MGI 1913929
Ensembl ENSMUSG00000027509
Vega OTTMUSG00000016688
Featureprotein-coding
GO_BP
  •   1 Terms
      cellular response to organic cyclic compound (GO:0071407)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.262
SPR
1.839
Oo
2.006
1C
1.536
2C
1.514
4C
1.653
ESC
1.237
MEF
2.064
p1C
1.494
p4C
1.662
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2017929
(v2.0)		Rae1NM_17511266679
17.298967.9853100.40833.361531.640843.982516.2659114.98330.203744.8871
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.103
H3.3
Rep.1
-0.36
H3.3
Rep.2
2.162
H3K4me3
Rep.1
1.446
H3K4me3
Rep.2
-1.23
H3K27me3
Rep.1
-0.948
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2017929
(v2.0)		Rae166679
708/533-0.103450/533-0.3596200/5332.1617579/5331.446454/533-1.2301418/533-0.9475
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.199
H3.3
Rep.1
0.024
H3.3
Rep.2
3.229
H3K4me3
Rep.1
2.558
H3K4me3
Rep.2
-1.844
H3K27me3
Rep.1
-1.12
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2017929
(v2.0)		Rae166679
385/2350.1986259/2350.024190/2353.2293555/2352.558315/235-1.8441163/235-1.1199
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2017929
(v2.0)		Rae166679
96.051117654.57
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2017929
(v2.0)		Rae166679
28.35510527
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0017416
(v1.0)		7539H3049F05-3Mm.4113Rae166679
U002907NAP006088-001Rae1;TC853109U,F3.573.62473.73213.52223.36843.44523.3007
MOE430 N/A
Agilent44K N/A
Proteome N/A