DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018124
GeneRcor1
SynonymsD12Wsu95e
Rocr1
DescriptionREST corepressor 1
LocusNM_198023 UCSC: chr12:112278009-112351597(+) OLP: chr12:112278009-112351597(+)
DB links


Entrez 217864
MGI 106340
Ensembl ENSMUSG00000037896
Vega OTTMUSG00000029929
Featureprotein-coding
GO_BP
  •   9 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      chromatin modification (GO:0016568)
      erythrocyte differentiation (GO:0030218)
      positive regulation of megakaryocyte differentiation (GO:0045654)
      negative regulation of transcription, DNA-templated (GO:0045892)
      histone H4 deacetylation (GO:0070933)
GO_MF
  •   5 Terms
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription (GO:0001078)
      DNA binding (GO:0003677)
      chromatin binding (GO:0003682)
      protein binding (GO:0005515)
      transcription regulatory region DNA binding (GO:0044212)
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
Log10 (FPKM+1)
1.04
SPR
0.763
Oo
1.046
1C
1.445
2C
1.234
4C
0.766
ESC
0.631
MEF
1.146
p1C
1.345
p4C
0.636
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018124
(v2.0)		Rcor1NM_198023217864
9.976194.799110.123126.830416.14534.832663.2762212.987321.12823.32936
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.385
H3.3
Rep.1
-0.023
H3.3
Rep.2
2.576
H3K4me3
Rep.1
1.759
H3K4me3
Rep.2
-0.918
H3K27me3
Rep.1
-0.905
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018124
(v2.0)		Rcor1217864
755/4050.3849432/405-0.023204/4052.5762547/4051.758651/405-0.9183327/405-0.9049
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
1.057
H3.3
Rep.1
0.402
H3.3
Rep.2
3.868
H3K4me3
Rep.1
3.072
H3K4me3
Rep.2
-2.356
H3K27me3
Rep.1
-1.371
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018124
(v2.0)		Rcor1217864
432/1451.057208/1450.4019188/1453.8675492/1453.0726/145-2.355684/145-1.3711
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018124
(v2.0)		Rcor1217864
36.870317121.56
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018124
(v2.0)		Rcor1217864
6.56621155.71
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A