DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018431
GeneRnf146
SynonymsIduna
Descriptionring finger protein 146
LocusNM_026518 UCSC: chr10:29063982-29082248(-) OLP: chr10:29063982-29082248(-)
NM_001110196 UCSC: chr10:29063982-29082248(-) OLP: chr10:29063982-29082248(-)
NM_001110198 UCSC: chr10:29063982-29082248(-) OLP: chr10:29063982-29082248(-)
NM_001110197 UCSC: chr10:29063982-29082248(-) OLP: chr10:29063982-29082248(-)
NM_001284279 UCSC: chr10:29063982-29077519(-) OLP: chr10:29063982-29077519(-)
DB links


Entrez 68031
MGI 1915281
Ensembl ENSMUSG00000038876
Featureprotein-coding
GO_BP
  •   5 Terms
      Wnt signaling pathway (GO:0016055)
      protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787)
      protein autoubiquitination (GO:0051865)
      protein K48-linked ubiquitination (GO:0070936)
      positive regulation of canonical Wnt signaling pathway (GO:0090263)
GO_MF
  •   15 Terms
      ubiquitin-protein transferase activity (GO:0004842)
      zinc ion binding (GO:0008270)
      UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
      ligase activity (GO:0016874)
      ribosomal S6-glutamic acid ligase activity (GO:0018169)
      coenzyme F420-0 gamma-glutamyl ligase activity (GO:0043773)
      coenzyme F420-2 alpha-glutamyl ligase activity (GO:0043774)
      metal ion binding (GO:0046872)
      protein-glycine ligase activity (GO:0070735)
      protein-glycine ligase activity, initiating (GO:0070736)
      protein-glycine ligase activity, elongating (GO:0070737)
      tubulin-glycine ligase activity (GO:0070738)
      protein-glutamic acid ligase activity (GO:0070739)
      tubulin-glutamic acid ligase activity (GO:0070740)
      poly-ADP-D-ribose binding (GO:0072572)
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.14
SPR
1.497
Oo
1.838
1C
1.575
2C
1.116
4C
1.233
ESC
1.148
MEF
1.739
p1C
1.215
p4C
1.193
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018431
(v2.0)		Rnf146NM_001110196,NM_001110197,NM_001110198,NM_001284279,NM_02651868031
12.807630.38767.803536.562112.058816.082713.05453.865915.394214.5819
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.533
H3.3
Rep.1
0.474
H3.3
Rep.2
3.555
H3K4me3
Rep.1
3.4
H3K4me3
Rep.2
0.456
H3K27me3
Rep.1
0.079
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018431
(v2.0)		Rnf14668031
713/3450.5332520/3450.4745345/3453.55541457/3453.4001114/3450.4555552/3450.0785
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.779
H3.3
Rep.1
0.556
H3.3
Rep.2
4.569
H3K4me3
Rep.1
4.313
H3K4me3
Rep.2
-0.293
H3K27me3
Rep.1
-0.348
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018431
(v2.0)		Rnf14668031
378/1540.7787246/1540.5565324/1544.56921235/1544.312630/154-0.2933183/154-0.3479
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018431
(v2.0)		Rnf14668031
34.59789436.81
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018431
(v2.0)		Rnf14668031
11.0396716.48
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A