DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018446
GeneRnf181
Synonyms
Descriptionring finger protein 181
LocusNM_025607 UCSC: chr6:72309708-72312375(-) OLP: chr6:72309708-72312375(-)
DB links


Entrez 66510
MGI 1913760
Ensembl ENSMUSG00000055850
Vega OTTMUSG00000023081
Featureprotein-coding
GO_BP
  •   1 Terms
GO_MF
  •   14 Terms
      ubiquitin-protein transferase activity (GO:0004842)
      zinc ion binding (GO:0008270)
      UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity (GO:0008766)
      ligase activity (GO:0016874)
      ribosomal S6-glutamic acid ligase activity (GO:0018169)
      coenzyme F420-0 gamma-glutamyl ligase activity (GO:0043773)
      coenzyme F420-2 alpha-glutamyl ligase activity (GO:0043774)
      metal ion binding (GO:0046872)
      protein-glycine ligase activity (GO:0070735)
      protein-glycine ligase activity, initiating (GO:0070736)
      protein-glycine ligase activity, elongating (GO:0070737)
      tubulin-glycine ligase activity (GO:0070738)
      protein-glutamic acid ligase activity (GO:0070739)
      tubulin-glutamic acid ligase activity (GO:0070740)
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
2.441
SPR
1.709
Oo
1.905
1C
1.381
2C
1.278
4C
1.909
ESC
1.224
MEF
1.982
p1C
1.28
p4C
1.985
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018446
(v2.0)		Rnf181NM_02560766510
274.77650.170679.383723.016317.950680.045415.754895.045818.073995.5457
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.085
H3.3
Rep.1
-0.397
H3.3
Rep.2
1.3
H3K4me3
Rep.1
0.799
H3K4me3
Rep.2
-1.362
H3K27me3
Rep.1
-1.684
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018446
(v2.0)		Rnf18166510
690/4560.0846375/456-0.397394/4561.3001316/4560.798842/456-1.362214/456-1.6838
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.19
H3.3
Rep.1
-0.351
H3.3
Rep.2
2.096
H3K4me3
Rep.1
1.42
H3K4me3
Rep.2
-1.544
H3K27me3
Rep.1
-2.094
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018446
(v2.0)		Rnf18166510
290/1780.1904151/178-0.351366/1782.0963191/1781.420314/178-1.544462/178-2.0941
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018446
(v2.0)		Rnf18166510
83.136914358.14
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018446
(v2.0)		Rnf18166510
36.42579339.17
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A