DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018525
GeneRpap3
SynonymsD15Ertd682e
DescriptionRNA polymerase II associated protein 3
LocusNM_028003 UCSC: chr15:97505536-97536253(-) OLP: chr15:97505536-97536253(-)
DB links


Entrez 71919
MGI 1277218
Ensembl ENSMUSG00000022466
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.827
SPR
1.432
Oo
1.485
1C
1.73
2C
1.902
4C
0.983
ESC
1.124
MEF
1.391
p1C
1.839
p4C
0.997
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018525
(v2.0)		Rpap3NM_02800371919
5.7203626.042729.524152.705378.88288.6245112.311723.606868.01398.94183
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.062
H3.3
Rep.1
-0.119
H3.3
Rep.2
1.302
H3K4me3
Rep.1
0.242
H3K4me3
Rep.2
-0.63
H3K27me3
Rep.1
-0.415
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018525
(v2.0)		Rpap371919
627/4210.0617420/421-0.119387/4211.3018198/4210.241665/421-0.6297478/421-0.415
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.245
H3.3
Rep.1
-0.015
H3.3
Rep.2
2.449
H3K4me3
Rep.1
1.359
H3K4me3
Rep.2
-1.759
H3K27me3
Rep.1
-1.498
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018525
(v2.0)		Rpap371919
303/1790.2453192/179-0.01585/1792.4489184/1791.358712/179-1.758895/179-1.4985
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018525
(v2.0)		Rpap371919
122.87617968.65
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018525
(v2.0)		Rpap371919
43.14648948.48
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A