DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018535
GeneRpia
Synonyms
Descriptionribose 5-phosphate isomerase A
LocusNM_009075 UCSC: chr6:70715714-70742169(-) OLP: chr6:70715714-70742169(-)
DB links


Entrez 19895
MGI 103254
Ensembl ENSMUSG00000053604
Vega OTTMUSG00000022844
Featureprotein-coding
GO_BP
  •   3 Terms
GO_MF
GO_CC
  •   1 Terms
      intracellular membrane-bounded organelle (GO:0043231)
KEGG
  •   2 Terms
Ver2_FPKM
Log10 (FPKM+1)
1.004
SPR
1.559
Oo
1.981
1C
2.036
2C
1.985
4C
0.625
ESC
0.997
MEF
2.05
p1C
1.856
p4C
0.704
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018535
(v2.0)		RpiaNM_00907519895
9.0878635.250694.6271107.58995.65383.214538.94065111.24170.80194.05841
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.038
H3.3
Rep.1
-0.222
H3.3
Rep.2
1.202
H3K4me3
Rep.1
0.492
H3K4me3
Rep.2
-0.994
H3K27me3
Rep.1
-0.821
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018535
(v2.0)		Rpia19895
662/4520.0376420/452-0.221687/4521.2021253/4520.491854/452-0.9943387/452-0.8209
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
-0.027
H3.3
Rep.1
-0.222
H3.3
Rep.2
2.215
H3K4me3
Rep.1
1.489
H3K4me3
Rep.2
-1.437
H3K27me3
Rep.1
-1.572
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018535
(v2.0)		Rpia19895
294/210-0.0273195/210-0.22284/2102.2152236/2101.488618/210-1.4369106/210-1.5721
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018535
(v2.0)		Rpia19895
59.552712049.63
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018535
(v2.0)		Rpia19895
20.11597825.79
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018008
(v1.0)		10176H3092B08-3Mm.17905Rpia19895
U027445NAP016000-001Rpia;TC832311P47968U,F,23.24553.30053.67253.32843.47283.38843.404
MOE430 N/A
Agilent44K N/A
Proteome N/A