DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018542
GeneRpl13a
SynonymsTstap198-7
tum-antigen
tum-transplantation antigen P198
Descriptionribosomal protein L13A
LocusNM_009438 UCSC: chr7:52380933-52384115(-) OLP: chr7:52380933-52384115(-)
DB links


Entrez 22121
MGI 1351455
Ensembl ENSMUSG00000074129
Vega OTTMUSG00000016498
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
3.115
SPR
4.059
Oo
4.741
1C
5.051
2C
5.371
4C
3.918
ESC
5.487
MEF
5.176
p1C
5.3
p4C
3.997
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018542
(v2.0)		Rpl13aNM_009438,NR_001277,NR_03958122121
1300.7911446.9551121125252352048283.473068041498401993899925.96
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.279
H3.3
Rep.1
-0.284
H3.3
Rep.2
4.542
H3K4me3
Rep.1
3.587
H3K4me3
Rep.2
-1.949
H3K27me3
Rep.1
-1.703
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018542
(v2.0)		Rpl13a22121
800/4620.2787411/462-0.2843909/4624.54162218/4623.587428/462-1.9489214/462-1.7026
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.365
H3.3
Rep.1
-0.331
H3.3
Rep.2
4.464
H3K4me3
Rep.1
3.639
H3K4me3
Rep.2
-2.251
H3K27me3
Rep.1
-2.026
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018542
(v2.0)		Rpl13a22121
357/1940.3654167/194-0.3305374/1944.4644972/1943.63919/194-2.250871/194-2.0265
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018542
(v2.0)		Rpl13a22121
83.230225932.14
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018542
(v2.0)		Rpl13a22121
26.610411922.36
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018015
(v1.0)		3456C0663C12-3Mm.13020Rpl13a22121
1.93522.40742.09492.41512.40182.432.3324
0018015
(v1.0)		18860L0229G12-3Mm.13020Rpl13a22121
U028516NAP093279-001TC798115,TC798111,TC798110P19253U,F,23.50873.46833.62654.28384.44.2854.2918
MOE430 N/A
Agilent44K N/A
Proteome N/A