DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018681
GeneRrp1
SynonymsNNP-1
Nnp1
Descriptionribosomal RNA processing 1 homolog (S. cerevisiae)
LocusNM_010925 UCSC: chr10:77863107-77875788(-) OLP: chr10:77863107-77875788(-)
DB links


Entrez 18114
MGI 1203500
Ensembl ENSMUSG00000061032
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
2.134
SPR
1.028
Oo
0.785
1C
1.678
2C
1.939
4C
1.861
ESC
1.437
MEF
0.794
p1C
1.89
p4C
1.902
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018681
(v2.0)		Rrp1NM_01092518114
135.0179.669085.0988146.679785.859171.642926.38065.2256376.657578.8711
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.137
H3.3
Rep.1
-0.219
H3.3
Rep.2
3.765
H3K4me3
Rep.1
2.728
H3K4me3
Rep.2
-2.325
H3K27me3
Rep.1
-1.39
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018681
(v2.0)		Rrp118114
681/4340.1368404/434-0.219499/4343.76551148/4342.727620/434-2.3252250/434-1.3897
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.518
H3.3
Rep.1
0.218
H3.3
Rep.2
5.03
H3K4me3
Rep.1
3.998
H3K4me3
Rep.2
-3.048
H3K27me3
Rep.1
-2.011
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018681
(v2.0)		Rrp118114
344/1680.5185212/1680.2182484/1685.031082/1683.99834/168-3.047962/168-2.0112
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018681
(v2.0)		Rrp118114
89.996916255.55
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018681
(v2.0)		Rrp118114
20.37468823.15
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A