DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2018871
GeneScaf1
Synonyms
DescriptionSR-related CTD-associated factor 1
LocusNM_001008422 UCSC: chr7:52258320-52271619(-) OLP: chr7:52258320-52271619(-)
DB links


Entrez 233208
MGI 2141980
Ensembl ENSMUSG00000038406
Vega OTTMUSG00000028917
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.229
SPR
1.462
Oo
1.634
1C
1.132
2C
0.767
4C
1.234
ESC
0.976
MEF
1.941
p1C
0.83
p4C
1.199
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2018871
(v2.0)		Scaf1NM_001008422233208
15.960527.982842.036312.54814.8535916.12758.4587986.35785.7538714.8286
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.226
H3.3
Rep.1
-0.665
H3.3
Rep.2
1.82
H3K4me3
Rep.1
1.344
H3K4me3
Rep.2
-1.295
H3K27me3
Rep.1
-0.945
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018871
(v2.0)		Scaf1233208
863/5170.226353/517-0.6651153/5171.8204523/5171.343750/517-1.2954406/517-0.9454
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.43
H3.3
Rep.1
-0.312
H3.3
Rep.2
3.133
H3K4me3
Rep.1
2.629
H3K4me3
Rep.2
-0.235
H3K27me3
Rep.1
-0.293
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2018871
(v2.0)		Scaf1233208
360/1870.4302163/187-0.3125143/1873.1334465/1872.629338/187-0.2355231/187-0.2928
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018871
(v2.0)		Scaf1233208
91.72217951.24
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2018871
(v2.0)		Scaf1233208
9.48988910.66
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A