DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2019291
GeneSh3d19
SynonymsKryn
DescriptionSH3 domain protein D19
LocusNM_001082414 UCSC: chr3:85888356-85934443(+) OLP: chr3:85888356-85934443(+)
DB links


Entrez 27059
MGI 1350923
Ensembl ENSMUSG00000028082
Vega OTTMUSG00000044337
Featureprotein-coding
GO_BP
  •   3 Terms
      cytoskeleton organization (GO:0007010)
      regulation of cell morphogenesis (GO:0022604)
      positive regulation of membrane protein ectodomain proteolysis (GO:0051044)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.921
SPR
1.215
Oo
1.436
1C
1.003
2C
0.848
4C
0.717
ESC
1.056
MEF
1.423
p1C
0.773
p4C
0.769
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019291
(v2.0)		Sh3d19NM_00108241427059
7.3393815.40826.27789.073526.041954.2102410.363425.51224.934894.8746
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.101
H3.3
Rep.1
-0.182
H3.3
Rep.2
-1.157
H3K4me3
Rep.1
-1.255
H3K4me3
Rep.2
0.761
H3K27me3
Rep.1
0.752
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019291
(v2.0)		Sh3d1927059
596/448-0.1008428/448-0.181716/448-1.157474/448-1.2553183/4480.76061144/4480.7519
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
-0.005
H3.3
Rep.1
-0.188
H3.3
Rep.2
-0.985
H3K4me3
Rep.1
-0.774
H3K4me3
Rep.2
0.832
H3K27me3
Rep.1
0.922
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019291
(v2.0)		Sh3d1927059
290/204-0.0053194/204-0.18778/204-0.984847/204-0.773988/2040.8319587/2040.9221
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019291
(v2.0)		Sh3d1927059
101.20313177.25
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019291
(v2.0)		Sh3d1927059
54.27957869.59
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018751
(v1.0)		13108H3158C08-3Mm.2454Sh3d1927059
U003395NAP094108-001Sh3d19;TC821238O08635U,F,23.27193.20053.18273.20993.21153.21153.245
MOE430 N/A
Agilent44K N/A
Proteome N/A