DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2019871
GeneSmarcb1
SynonymsBaf47
Ini1
integrase interactor 1
Snf5
SNF5/INI1
DescriptionSWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
LocusNM_001161853 UCSC: chr10:75359514-75384359(-) OLP: chr10:75359514-75384359(-)
NM_011418 UCSC: chr10:75359514-75384359(-) OLP: chr10:75359514-75384359(-)
DB links


Entrez 20587
MGI 1328366
Ensembl ENSMUSG00000000902
Vega OTTMUSG00000031849
Featureprotein-coding
GO_BP
  •   19 Terms
      blastocyst development (GO:0001824)
      blastocyst hatching (GO:0001835)
      DNA repair (GO:0006281)
      nucleosome disassembly (GO:0006337)
      chromatin remodeling (GO:0006338)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
      cell cycle (GO:0007049)
      nervous system development (GO:0007399)
      negative regulation of cell proliferation (GO:0008285)
      chromatin modification (GO:0016568)
      cell differentiation (GO:0030154)
      single stranded viral RNA replication via double stranded DNA intermediate (GO:0039692)
      ATP-dependent chromatin remodeling (GO:0043044)
      positive regulation by host of viral transcription (GO:0043923)
      mitotic cell cycle phase transition (GO:0044772)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of sequence-specific DNA binding transcription factor activity (GO:0051091)
GO_MF
  •   7 Terms
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019871
(v2.0)		Smarcb1NM_001161853,NM_01141820587
24.949141.85524.734225.246823.007420.851912.037332.847517.614822.083
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019871
(v2.0)		Smarcb120587
762/535-0.0026460/535-0.3334174/5351.9565364/5350.772938/535-1.7314301/535-1.4246
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019871
(v2.0)		Smarcb120587
354/1950.3459183/195-0.2067166/1953.2903342/1952.127512/195-1.879697/195-1.5918
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019871
(v2.0)		Smarcb120587
93.611619548.01
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019871
(v2.0)		Smarcb120587
11.368710910.43
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019313
(v1.0)		3073C0508B07-3Mm.26116Smarcb120587
U031936NAP122069-001Smarcb1;TC886621,TC886620,TC827212Q9ESU03.67163.90423.51563.87763.47963.7723.7306
0019313
(v1.0)		11632H3120A03-5Smarcb120587
U031936NAP095646-001Smarcb1;TC886622,TC886620Q9ESU02.75712.90192.75432.69972.78142.83062.9124
MOE430 N/A
Agilent44K N/A
Proteome N/A