DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2019885
GeneSmc6
SynonymsSmc6l1
Descriptionstructural maintenance of chromosomes 6
LocusNM_025695 UCSC: chr12:11272692-11326591(+) OLP: chr12:11272692-11326591(+)
DB links


Entrez 67241
MGI 1914491
Ensembl ENSMUSG00000020608
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.975
SPR
1.527
Oo
1.9
1C
1.981
2C
1.841
4C
1.122
ESC
1.313
MEF
1.739
p1C
1.848
p4C
1.116
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019885
(v2.0)		Smc6NM_02569567241
8.4402132.620178.479694.821268.30612.249319.565353.885169.499412.0657
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.45
H3.3
Rep.1
0.381
H3.3
Rep.2
2.64
H3K4me3
Rep.1
1.619
H3K4me3
Rep.2
-0.082
H3K27me3
Rep.1
-0.548
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019885
(v2.0)		Smc667241
671/3440.45486/3440.3814182/3442.6405422/3441.61978/344-0.0821356/344-0.5479
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.9
H3.3
Rep.1
0.497
H3.3
Rep.2
3.872
H3K4me3
Rep.1
2.777
H3K4me3
Rep.2
-0.083
H3K27me3
Rep.1
-0.134
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019885
(v2.0)		Smc667241
366/1370.9210/1370.4969179/1373.8724379/1372.776931/137-0.0834189/137-0.1341
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019885
(v2.0)		Smc667241
44.529612834.79
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019885
(v2.0)		Smc667241
10.01229111
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A