DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2019897
GeneSmg5
Synonyms
DescriptionSmg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
LocusNM_178246 UCSC: chr3:88140182-88166259(+) OLP: chr3:88140182-88166259(+)
DB links


Entrez 229512
MGI 2447364
Ensembl ENSMUSG00000001415
Featureprotein-coding
GO_BP
  •   2 Terms
      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
      regulation of dephosphorylation (GO:0035303)
GO_MF
  •   1 Terms
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019897
(v2.0)		Smg5NM_178246229512
18.02362.966157.215478.3318114.30743.607819.97276.95791101.22349.3746
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019897
(v2.0)		Smg5229512
680/4130.2061399/413-0.1655147/4132.0787514/4131.641120/4130.2722599/413-0.0628
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019897
(v2.0)		Smg5229512
284/1710.2179160/171-0.210898/1712.7137214/1711.640516/171-1.307392/171-1.4785
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019897
(v2.0)		Smg5229512
55.776317332.24
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019897
(v2.0)		Smg5229512
17.76128421.14
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A