DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2020118
GeneSnta1
Synonymsalpha1-syntrophin
Snt1
Descriptionsyntrophin, acidic 1
LocusNM_009228 UCSC: chr2:154202050-154233820(-) OLP: chr2:154202050-154233820(-)
DB links


Entrez 20648
MGI 101772
Ensembl ENSMUSG00000027488
Vega OTTMUSG00000015793
Featureprotein-coding
GO_BP
  •   7 Terms
      regulation of heart rate (GO:0002027)
      regulation of vasoconstriction by circulating norepinephrine (GO:0003117)
      neuromuscular junction development (GO:0007528)
      regulation of ventricular cardiac muscle cell membrane repolarization (GO:0060307)
      ventricular cardiac muscle cell action potential (GO:0086005)
      negative regulation of peptidyl-cysteine S-nitrosylation (GO:1902083)
      regulation of sodium ion transmembrane transport (GO:1902305)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.747
SPR
0.638
Oo
0.74
1C
1.137
2C
0.956
4C
1.036
ESC
1.172
MEF
0.804
p1C
0.916
p4C
1.149
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020118
(v2.0)		Snta1NM_00922820648
4.589493.346314.496312.70448.04139.8643513.84575.368657.2407813.0949
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.182
H3.3
Rep.1
-0.076
H3.3
Rep.2
1.583
H3K4me3
Rep.1
0.643
H3K4me3
Rep.2
1.472
H3K27me3
Rep.1
1.302
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020118
(v2.0)		Snta120648
630/3890.1823400/389-0.075898/3891.5825242/3890.6432261/3891.47221455/3891.3016
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.327
H3.3
Rep.1
-0.091
H3.3
Rep.2
2.426
H3K4me3
Rep.1
1.476
H3K4me3
Rep.2
1.633
H3K27me3
Rep.1
1.343
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020118
(v2.0)		Snta120648
310/1730.327176/173-0.090981/1732.4262193/1731.4757131/1731.6332667/1731.3425
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020118
(v2.0)		Snta120648
54.347212543.48
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020118
(v2.0)		Snta120648
17.04868520.06
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019541
(v1.0)		6568H3028E02-3Mm.1541Snta120648
U023522NAP109023-1Snta1;TC831938,TC831937Q61234U2.8292.80732.80582.86593.21213.12433.0091
MOE430 N/A
Agilent44K N/A
Proteome N/A