DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2020146
GeneSnx3
SynonymsSDP3
Descriptionsorting nexin 3
LocusNM_017472 UCSC: chr10:42221860-42255175(+) OLP: chr10:42221860-42255175(+)
DB links


Entrez 54198
MGI 1860188
Ensembl ENSMUSG00000019804
Vega OTTMUSG00000019461
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
2.14
SPR
1.739
Oo
1.618
1C
1.955
2C
2.175
4C
1.954
ESC
1.771
MEF
1.755
p1C
2.151
p4C
1.992
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020146
(v2.0)		Snx3NM_01747254198
136.98653.788140.473189.2071148.49688.861358.066755.8518140.53197.182
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.398
H3.3
Rep.1
0.326
H3.3
Rep.2
4.792
H3K4me3
Rep.1
3.93
H3K4me3
Rep.2
-1.156
H3K27me3
Rep.1
-1.099
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020146
(v2.0)		Snx354198
760/4040.398549/4040.3255949/4044.79192462/4043.930343/404-1.1558285/404-1.0987
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.753
H3.3
Rep.1
0.569
H3.3
Rep.2
5.693
H3K4me3
Rep.1
4.706
H3K4me3
Rep.2
-1.637
H3K27me3
Rep.1
-1.415
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020146
(v2.0)		Snx354198
458/1900.7534306/1900.5689861/1905.69341996/1904.706114/190-1.6365107/190-1.415
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020146
(v2.0)		Snx354198
63.395315241.71
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020146
(v2.0)		Snx354198
20.123910618.98
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019569
(v1.0)		11353H3113H04-3Snx354198
U011447NAP004940-001Snx3;TC793108,TC793105,TC793099O70492U,F,24.03684.04334.49564.72834.81384.75924.7971
MOE430 N/A
Agilent44K N/A
Proteome N/A