DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2020153
GeneSnx6
Synonyms
Descriptionsorting nexin 6
LocusNM_026998 UCSC: chr12:55847344-55896649(-) OLP: chr12:55847344-55896649(-)
DB links


Entrez 72183
MGI 1919433
Ensembl ENSMUSG00000005656
Featureprotein-coding
GO_BP
  •   6 Terms
      transport (GO:0006810)
      intracellular protein transport (GO:0006886)
      protein transport (GO:0015031)
      negative regulation of transforming growth factor beta receptor signaling pathway (GO:0030512)
      retrograde transport, endosome to Golgi (GO:0042147)
      negative regulation of transcription, DNA-templated (GO:0045892)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.346
SPR
1.648
Oo
1.674
1C
1.707
2C
1.879
4C
1.628
ESC
1.507
MEF
1.569
p1C
1.805
p4C
1.616
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020153
(v2.0)		Snx6NM_02699872183
21.180343.436346.229849.900774.651841.48631.10136.045662.840240.3317
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.252
H3.3
Rep.1
-0.168
H3.3
Rep.2
1.057
H3K4me3
Rep.1
0.102
H3K4me3
Rep.2
-0.521
H3K27me3
Rep.1
-0.231
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020153
(v2.0)		Snx672183
673/3960.2517382/396-0.167769/3961.0574169/3960.102266/396-0.5206511/396-0.2309
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.503
H3.3
Rep.1
-0.18
H3.3
Rep.2
2.136
H3K4me3
Rep.1
1.195
H3K4me3
Rep.2
-1.592
H3K27me3
Rep.1
-1.095
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020153
(v2.0)		Snx672183
322/1590.5026152/159-0.1861/1592.1363146/1591.195412/159-1.5919112/159-1.0945
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020153
(v2.0)		Snx672183
72.837812359.22
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020153
(v2.0)		Snx672183
16.87576426.37
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A