DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2020168
GeneSod2
Synonymsmanganese SOD
manganese superoxide dismutase
MnSOD
Sod-2
Descriptionsuperoxide dismutase 2, mitochondrial
LocusNM_013671 UCSC: chr17:13200705-13210985(+) OLP: chr17:13200705-13210985(+)
DB links


Entrez 20656
MGI 98352
Ensembl ENSMUSG00000006818
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.584
SPR
0.983
Oo
1.024
1C
1.483
2C
1.588
4C
1.576
ESC
1.37
MEF
1.074
p1C
1.589
p4C
1.535
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020168
(v2.0)		Sod2NM_01367120656
37.40128.621929.5572129.425737.748136.687422.468410.857137.837433.289
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.194
H3.3
Rep.1
0.046
H3.3
Rep.2
2.845
H3K4me3
Rep.1
1.739
H3K4me3
Rep.2
-1.615
H3K27me3
Rep.1
-1.339
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020168
(v2.0)		Sod220656
493/3020.1936338/3020.0461185/3022.845403/3021.739123/302-1.6154180/302-1.3386
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.458
H3.3
Rep.1
-0.025
H3.3
Rep.2
3.879
H3K4me3
Rep.1
2.837
H3K4me3
Rep.2
-2.286
H3K27me3
Rep.1
-1.898
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020168
(v2.0)		Sod220656
271/1380.458147/138-0.0249181/1383.8787398/1382.83696/138-2.286355/138-1.8977
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020168
(v2.0)		Sod220656
43.34239744.68
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020168
(v2.0)		Sod220656
9.96776216.08
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019591
(v1.0)		2691C0352F05-3Mm.2597Sod220656
U017505NAP097815-001Sod2;TC919199P09671U,F,23.8713.91513.77714.0973.80624.16694.343
0019591
(v1.0)		3472C0665F12-3Mm.2597Sod220656
U043559NAP019434-001TC843349P09671U,F,22.47452.52012.6562.99912.72612.97262.879
MOE430 N/A
Agilent44K N/A
Proteome N/A