DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2020219
GeneSp3
Synonyms
Descriptiontrans-acting transcription factor 3
LocusNM_001098425 UCSC: chr2:72774490-72817338(-) OLP: chr2:72774490-72817338(-)
NM_001018042 UCSC: chr2:72774490-72818503(-) OLP: chr2:72774490-72818503(-)
DB links


Entrez 20687
MGI 1277166
Ensembl ENSMUSG00000027109
Vega OTTMUSG00000013207
Featureprotein-coding
GO_BP
GO_MF
  •   10 Terms
      RNA polymerase II core promoter sequence-specific DNA binding (GO:0000979)
      core promoter proximal region sequence-specific DNA binding (GO:0000987)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription (GO:0001078)
      nucleic acid binding (GO:0003676)
      DNA binding (GO:0003677)
      chromatin binding (GO:0003682)
      double-stranded DNA binding (GO:0003690)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      protein binding (GO:0005515)
      metal ion binding (GO:0046872)
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.09
SPR
1.177
Oo
1.237
1C
1.693
2C
1.469
4C
1.599
ESC
1.408
MEF
1.223
p1C
1.523
p4C
1.495
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020219
(v2.0)		Sp3NM_001018042,NM_00109842520687
11.31414.022116.259248.311328.458538.694824.582815.704232.348330.2825
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.785
H3.3
Rep.1
0.412
H3.3
Rep.2
2.959
H3K4me3
Rep.1
2.063
H3K4me3
Rep.2
-2.217
H3K27me3
Rep.1
-2.059
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020219
(v2.0)		Sp320687
800/3250.7849469/3250.4118215/3252.9588543/3252.063316/325-2.2174117/325-2.0592
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
1.641
H3.3
Rep.1
0.852
H3.3
Rep.2
4.263
H3K4me3
Rep.1
3.28
H3K4me3
Rep.2
-2.007
H3K27me3
Rep.1
-1.377
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2020219
(v2.0)		Sp320687
506/1131.6413222/1130.8524197/1134.2631445/1133.28026/113-2.007265/113-1.3766
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020219
(v2.0)		Sp320687
43.494914330.42
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2020219
(v2.0)		Sp320687
7.1747987.32
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019641
(v1.0)		432C0106E10-3Mm.28513Sp320687
U022740NAP096785-001Sp3;TC898608,TC898607O70494U,F,22.29132.61962.74732.9092.8852.8213.1754
0019641
(v1.0)		9559H3083C05-3Mm.28513Sp320687
U022740NAP096785-001Sp3;TC898608,TC898607O70494U,F,22.30162.45322.9332.96342.48082.38592.4675
MOE430 N/A
Agilent44K N/A
Proteome N/A