DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2021079
GeneTcof1
Synonymstreacle
DescriptionTreacher Collins Franceschetti syndrome 1, homolog
LocusNM_011552 UCSC: chr18:60973410-61008618(-) OLP: chr18:60973410-61008618(-)
NM_001198984 UCSC: chr18:60973410-61008618(-) OLP: chr18:60973410-61008618(-)
DB links


Entrez 21453
MGI 892003
Ensembl ENSMUSG00000024613
Vega OTTMUSG00000039736
Featureprotein-coding
GO_BP
  •   2 Terms
      transport (GO:0006810)
      transcription of nuclear large rRNA transcript from RNA polymerase I promoter (GO:0042790)
GO_MF
GO_CC
KEGG
  •   1 Terms
      Ribosome biogenesis in eukaryotes (mmu03008)
Ver2_FPKM
Log10 (FPKM+1)
0.828
SPR
1.433
Oo
1.413
1C
1.603
2C
1.414
4C
1.355
ESC
1.077
MEF
1.442
p1C
1.356
p4C
1.337
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021079
(v2.0)		Tcof1NM_001198984,NM_01155221453
5.7273526.072124.881239.066824.923521.671710.94426.686221.716920.7038
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.306
H3.3
Rep.1
-0.564
H3.3
Rep.2
1.523
H3K4me3
Rep.1
0.342
H3K4me3
Rep.2
-1.344
H3K27me3
Rep.1
-1.025
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2021079
(v2.0)		Tcof121453
556/482-0.3061353/482-0.5641116/4821.5227243/4820.341645/482-1.3439358/482-1.0253
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
-0.208
H3.3
Rep.1
-0.465
H3.3
Rep.2
2.544
H3K4me3
Rep.1
1.47
H3K4me3
Rep.2
-1.935
H3K27me3
Rep.1
-1.749
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2021079
(v2.0)		Tcof121453
211/171-0.2083134/171-0.464887/1712.5437190/1711.469810/171-1.935376/171-1.7492
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2021079
(v2.0)		Tcof121453
99.255514767.52
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2021079
(v2.0)		Tcof121453
23.47756735.04
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A