DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2021887
GeneTrafd1
SynonymsFln29
DescriptionTRAF type zinc finger domain containing 1
LocusNM_001163470 UCSC: chr5:121821734-121835624(-) OLP: chr5:121821734-121835624(-)
NM_172275 UCSC: chr5:121821734-121835624(-) OLP: chr5:121821734-121835624(-)
DB links


Entrez 231712
MGI 1923551
Ensembl ENSMUSG00000042726
Vega OTTMUSG00000026315
Featureprotein-coding
GO_BP
  •   1 Terms
      negative regulation of innate immune response (GO:0045824)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.71
SPR
1.819
Oo
2.174
1C
1.219
2C
1.043
4C
0.807
ESC
1.281
MEF
2.135
p1C
1.123
p4C
0.878
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021887
(v2.0)		Trafd1NM_001163470,NM_172275231712
50.232264.8607148.18515.576110.04675.4116118.1115135.34412.27596.54566
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
-0.082
H3.3
Rep.1
-0.386
H3.3
Rep.2
2.007
H3K4me3
Rep.1
1.136
H3K4me3
Rep.2
-1.54
H3K27me3
Rep.1
-1.276
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2021887
(v2.0)		Trafd1231712
631/468-0.0815388/468-0.3857158/4682.0067410/4681.136238/468-1.54292/468-1.2755
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.09
H3.3
Rep.1
-0.148
H3.3
Rep.2
3.208
H3K4me3
Rep.1
2.331
H3K4me3
Rep.2
-2.273
H3K27me3
Rep.1
-1.817
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2021887
(v2.0)		Trafd1231712
269/1770.0905173/177-0.1483143/1773.2077358/1772.33128/177-2.273475/177-1.8174
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2021887
(v2.0)		Trafd1231712
73.270914949.18
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2021887
(v2.0)		Trafd1231712
13.15818515.48
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A