DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2021947
GeneTrim23
SynonymsArfd1
Descriptiontripartite motif-containing 23
LocusNM_030731 UCSC: chr13:104969178-104992128(+) OLP: chr13:104969178-104992128(+)
DB links


Entrez 81003
MGI 1933161
Ensembl ENSMUSG00000021712
Vega OTTMUSG00000035058
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.53
SPR
0.741
Oo
0.911
1C
0.957
2C
0.921
4C
0.801
ESC
0.92
MEF
0.722
p1C
0.889
p4C
0.64
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021947
(v2.0)		Trim23NM_03073181003
2.385614.510557.149028.048317.342085.327747.317674.276566.747363.36046
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.2
H3.3
Rep.1
0.088
H3.3
Rep.2
2.261
H3K4me3
Rep.1
1.365
H3K4me3
Rep.2
-3.846
H3K27me3
Rep.1
-2.856
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2021947
(v2.0)		Trim2381003
582/3550.1999409/3550.0878144/3552.2608365/3551.36515/355-3.845773/355-2.8556
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.326
H3.3
Rep.1
0.108
H3.3
Rep.2
3.226
H3K4me3
Rep.1
2.344
H3K4me3
Rep.2
-5.403
H3K27me3
Rep.1
-2.925
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2021947
(v2.0)		Trim2381003
308/1720.326201/1720.108141/1723.2262351/1722.34350/172-5.40333/172-2.9248
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2021947
(v2.0)		Trim2381003
48.821812539.06
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2021947
(v2.0)		Trim2381003
12.27478514.44
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A