DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2022279

Gene

Txn2

Synonyms

Trx2

Description

thioredoxin 2

Locus

NM_019913 UCSC: chr15:77745481-77759424(-) OLP: chr15:77745481-77759424(-)

DB links

Entrez 56551
MGI 1929468
Ensembl ENSMUSG00000005354
Vega OTTMUSG00000020980

Feature

protein-coding

GO_BP

4 Terms

GO_MF

4 Terms

GO_CC

4 Terms

KEGG

Log10 (FPKM+1)

1.876

SPR

2.006

Oo

2.198

1C

1.512

2C

1.662

4C

1.946

ESC

1.875

MEF

2.396

p1C

1.71

p4C

2.053

iPSC

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2022279 (v2.0)	Txn2	NM_019913	56551	74.1976	100.478	156.884	31.5173	44.8949	87.3063	73.983	247.85	50.2942	112.028

SPR_Histone_Erkek_5KaroundTSS

Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)

-0.065

H3.3
Rep.1

-0.622

H3.3
Rep.2

1.536

H3K4me3
Rep.1

0.559

H3K4me3
Rep.2

-3.294

H3K27me3
Rep.1

-2.413

H3K27me3
Rep.2

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2022279 (v2.0)	Txn2	56551	663/486	-0.0646	342/486	-0.6216	118/486	1.5355	285/486	0.5589	11/486	-3.2944	137/486	-2.4132

SPR_Histone_Erkek_2KaroundTSS

Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)

-0.181

H3.3
Rep.1

-0.664

H3.3
Rep.2

2.3

H3K4me3
Rep.1

1.267

H3K4me3
Rep.2

-3.409

H3K27me3
Rep.1

-2.924

H3K27me3
Rep.2

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2022279 (v2.0)	Txn2	56551	273/217	-0.1807	148/217	-0.6644	92/217	2.3002	209/217	1.2673	4/217	-3.4093	42/217	-2.9241

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2022279 (v2.0)	Txn2	56551	101.394	168	60.35

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2022279 (v2.0)	Txn2	56551	30.2096	83	36.4

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0021645 (v1.0)	7941	H3056G10-3	Mm.3533	Txn2	56551	U036372	NAP007693-001	Txn2;	TC804322,TC804321,TC804320	P97493	U,F,2	3.5457	3.512	3.5103	3.716	3.7169	3.787	3.7695

N/A

N/A

N/A