DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2022379
GeneUbfd1
SynonymsD7Wsu105e
D7Wsu128e
Descriptionubiquitin family domain containing 1
LocusNM_138589 UCSC: chr7:129210712-129225713(+) OLP: chr7:129210712-129225713(+)
DB links


Entrez 28018
MGI 107301
Ensembl ENSMUSG00000030870
Vega OTTMUSG00000025468
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.213
SPR
1.77
Oo
1.99
1C
1.854
2C
1.741
4C
1.235
ESC
1.282
MEF
1.983
p1C
1.627
p4C
1.303
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022379
(v2.0)		Ubfd1NM_13858928018
15.34357.846496.621770.49354.045316.170518.16495.148641.368119.1083
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.243
H3.3
Rep.1
0.001
H3.3
Rep.2
2.419
H3K4me3
Rep.1
1.604
H3K4me3
Rep.2
-3.142
H3K27me3
Rep.1
-2.522
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022379
(v2.0)		Ubfd128018
738/4370.2427474/4370.0011197/4372.4194530/4371.604111/437-3.1424114/437-2.5222
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.489
H3.3
Rep.1
0.068
H3.3
Rep.2
3.478
H3K4me3
Rep.1
2.661
H3K4me3
Rep.2
-2.794
H3K27me3
Rep.1
-2.247
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022379
(v2.0)		Ubfd128018
397/1980.4887225/1980.0679192/1983.4784503/1982.6616/198-2.794262/198-2.2469
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022379
(v2.0)		Ubfd128018
55.544213242.08
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022379
(v2.0)		Ubfd128018
18.17079319.54
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A