DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2022387
GeneUbn1
Synonyms
Descriptionubinuclein 1
LocusNM_026666 UCSC: chr16:5050161-5086378(+) OLP: chr16:5050161-5086378(+)
DB links


Entrez 170644
MGI 1891307
Ensembl ENSMUSG00000039473
Featureprotein-coding
GO_BP
  •   4 Terms
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.014
SPR
1.755
Oo
1.842
1C
2.067
2C
1.609
4C
0.937
ESC
1.122
MEF
1.923
p1C
1.64
p4C
0.911
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022387
(v2.0)		Ubn1NM_026666170644
9.3159955.820468.5621115.55739.65197.658312.235382.663242.68697.14882
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.666
H3.3
Rep.1
0.6
H3.3
Rep.2
4.573
H3K4me3
Rep.1
3.509
H3K4me3
Rep.2
-3.065
H3K27me3
Rep.1
-2.368
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022387
(v2.0)		Ubn1170644
859/3790.6662623/3790.5995766/3794.57261725/3793.508910/379-3.0646110/379-2.3681
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
1.046
H3.3
Rep.1
0.844
H3.3
Rep.2
5.541
H3K4me3
Rep.1
4.45
H3K4me3
Rep.2
-2.66
H3K27me3
Rep.1
-1.861
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022387
(v2.0)		Ubn1170644
532/1801.0465351/1800.8437736/1805.54061584/1804.44976/180-2.659774/180-1.8605
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022387
(v2.0)		Ubn1170644
43.049611039.14
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022387
(v2.0)		Ubn1170644
6.4319728.93
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021751
(v1.0)		9381H3080D07-3Mm.26718Ubn1170644
Ubn13.5633.69793.93073.68953.7323.85413.7007
MOE430 N/A
Agilent44K N/A
Proteome N/A