DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2022505
GeneUpf3b
SynonymsRENT3B
UPF3X
DescriptionUPF3 regulator of nonsense transcripts homolog B (yeast)
LocusNM_026573 UCSC: chrX:34631829-34650317(-) OLP: chrX:34631829-34650317(-)
DB links


Entrez 68134
MGI 1915384
Ensembl ENSMUSG00000036572
Vega OTTMUSG00000017109
Featureprotein-coding
GO_BP
  •   3 Terms
      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
      response to unfolded protein (GO:0006986)
      positive regulation of translation (GO:0045727)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.722
SPR
0.905
Oo
0.941
1C
1.12
2C
1.239
4C
1.307
ESC
0.874
MEF
0.828
p1C
1.328
p4C
1.275
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022505
(v2.0)		Upf3bNM_02657368134
4.270037.037297.7335812.17816.355119.27456.484055.7285720.270917.8523
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.088
H3.3
Rep.1
-0.011
H3.3
Rep.2
2.323
H3K4me3
Rep.1
2.136
H3K4me3
Rep.2
-0.168
H3K27me3
Rep.1
-0.296
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022505
(v2.0)		Upf3b68134
320/2110.0876227/211-0.010791/2112.3229372/2112.136145/211-0.1679260/211-0.2965
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
-0.141
H3.3
Rep.1
-0.17
H3.3
Rep.2
3.092
H3K4me3
Rep.1
2.846
H3K4me3
Rep.2
-0.819
H3K27me3
Rep.1
-1.329
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022505
(v2.0)		Upf3b68134
137/106-0.1413102/106-0.1782/1063.0918309/1062.845614/106-0.818863/106-1.3293
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022505
(v2.0)		Upf3b68134
30.665810928.13
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022505
(v2.0)		Upf3b68134
8.17668010.22
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A