DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2022568
GeneUsp28
Synonyms
Descriptionubiquitin specific peptidase 28
LocusNM_175482 UCSC: chr9:48793490-48850622(+) OLP: chr9:48793490-48850622(+)
DB links


Entrez 235323
MGI 2442293
Ensembl ENSMUSG00000032267
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
0.542
SPR
2.143
Oo
2.421
1C
1.717
2C
1.187
4C
1.34
ESC
0.957
MEF
2.369
p1C
1.256
p4C
1.409
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022568
(v2.0)		Usp28NM_175482235323
2.48266137.967262.4751.167814.394120.87958.05177233.07917.049824.6529
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.053
H3.3
Rep.1
-0.14
H3.3
Rep.2
1.429
H3K4me3
Rep.1
0.138
H3K4me3
Rep.2
-1.528
H3K27me3
Rep.1
-1.663
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022568
(v2.0)		Usp28235323
616/4160.0534409/416-0.140394/4161.429182/4160.137834/416-1.5277198/416-1.6629
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.293
H3.3
Rep.1
0.191
H3.3
Rep.2
2.68
H3K4me3
Rep.1
1.274
H3K4me3
Rep.2
-1.751
H3K27me3
Rep.1
-1.482
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022568
(v2.0)		Usp28235323
287/1640.2929203/1640.190592/1642.6797159/1641.273711/164-1.75188/164-1.4816
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022568
(v2.0)		Usp28235323
65.581715043.72
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022568
(v2.0)		Usp28235323
25.831610724.14
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A