DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2022588
GeneUsp47
Synonyms
Descriptionubiquitin specific peptidase 47
LocusNM_133758 UCSC: chr7:119167020-119254900(+) OLP: chr7:119167020-119254900(+)
NM_177249 UCSC: chr7:119167020-119254900(+) OLP: chr7:119167020-119254900(+)
DB links


Entrez 74996
MGI 1922246
Ensembl ENSMUSG00000059263
Featureprotein-coding
GO_BP
  •   14 Terms
      DNA repair (GO:0006281)
      base-excision repair (GO:0006284)
      proteolysis (GO:0006508)
      ubiquitin-dependent protein catabolic process (GO:0006511)
      cellular response to DNA damage stimulus (GO:0006974)
      negative regulation of G2/M transition of mitotic cell cycle (GO:0010972)
      positive regulation of cell growth (GO:0030307)
      cellular response to UV (GO:0034644)
      monoubiquitinated protein deubiquitination (GO:0035520)
      response to drug (GO:0042493)
      negative regulation of apoptotic process (GO:0043066)
      negative regulation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0043154)
      negative regulation of transcription, DNA-templated (GO:0045892)
      negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage (GO:1902230)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.398
SPR
1.48
Oo
1.692
1C
1.558
2C
1.326
4C
1.144
ESC
1.651
MEF
1.598
p1C
1.384
p4C
1.143
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022588
(v2.0)		Usp47NM_133758,NM_17724974996
23.993729.212848.154435.108420.171312.922243.797438.629523.206712.9083
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.21
H3.3
Rep.1
0.017
H3.3
Rep.2
2.454
H3K4me3
Rep.1
1.418
H3K4me3
Rep.2
-0.225
H3K27me3
Rep.1
-0.404
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022588
(v2.0)		Usp4774996
700/4240.21465/4240.0169196/4242.4545452/4241.418287/424-0.2248485/424-0.4043
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.544
H3.3
Rep.1
0.234
H3.3
Rep.2
3.686
H3K4me3
Rep.1
2.574
H3K4me3
Rep.2
-1.192
H3K27me3
Rep.1
-1.23
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2022588
(v2.0)		Usp4774996
348/1670.5437213/1670.2335189/1673.686400/1672.573517/167-1.1915107/167-1.2299
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022588
(v2.0)		Usp4774996
50.61714634.67
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2022588
(v2.0)		Usp4774996
11.068610410.64
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A