DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2010020
GeneHmgb3
SynonymsHmg2a
Hmg4
Descriptionhigh mobility group box 3
LocusNM_001293623 UCSC: chrX:68809092-68813848(+) OLP: chrX:68809092-68813848(+)
NM_001293624 UCSC: chrX:68809092-68813848(+) OLP: chrX:68809092-68813848(+)
NM_001293625 UCSC: chrX:68809092-68813848(+) OLP: chrX:68809092-68813848(+)
NM_008253 UCSC: chrX:68809092-68813848(+) OLP: chrX:68809092-68813848(+)
DB links


Entrez 15354
MGI 1098219
Ensembl ENSMUSG00000015217
Vega OTTMUSG00000017794
Featureprotein-coding
GO_BP
  •   2 Terms
      negative regulation of B cell differentiation (GO:0045578)
      negative regulation of myeloid cell differentiation (GO:0045638)
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.568
SPR
1.481
Oo
1.92
1C
2.579
2C
2.482
4C
1.793
ESC
1.367
MEF
1.726
p1C
2.547
p4C
1.807
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010020
(v2.0)		Hmgb3NM_001293623,NM_001293624,NM_001293625,NM_00825315354
35.940829.246182.0855378.49302.61961.04222.261752.2262351.5863.0848
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.489
H3.3
Rep.1
-0.108
H3.3
Rep.2
3.148
H3K4me3
Rep.1
2.515
H3K4me3
Rep.2
0.554
H3K27me3
Rep.1
0.441
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010020
(v2.0)		Hmgb315354
401/2000.4887201/200-0.1084154/2003.1484459/2002.514971/2000.5541412/2000.4414
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
1.132
H3.3
Rep.1
0.422
H3.3
Rep.2
4.289
H3K4me3
Rep.1
3.725
H3K4me3
Rep.2
1.038
H3K27me3
Rep.1
0.602
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2010020
(v2.0)		Hmgb315354
255/811.132118/810.4221149/814.2886438/813.725441/811.0379187/810.6016
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010020
(v2.0)		Hmgb315354
58.087911052.81
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2010020
(v2.0)		Hmgb315354
20.36376630.85
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010137
(v1.0)		4976G0117C11-3Mm.340Hmgb315354
U019917NAP094469-001Hmgb3;TC891664,TC891659O54879U,F,23.31793.29273.44953.81892.92083.0932.7842
MOE430 N/A
Agilent44K N/A
Proteome N/A