DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2016168

Gene

Pa2g4

Synonyms

Ebp1
Plfap

Description

proliferation-associated 2G4

Locus

NM_011119 UCSC: chr10:127994822-128002990(-) OLP: chr10:127994822-128002990(-)

DB links

Entrez 18813
MGI 894684
Ensembl ENSMUSG00000025364
Vega OTTMUSG00000024830

Feature

protein-coding

GO_BP

5 Terms

GO_MF

6 Terms

GO_CC

5 Terms

KEGG

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2016168 (v2.0)	Pa2g4	NM_011119	18813	35.9243	43.5243	43.2351	359.602	653.139	211.324	119.639	49.6828	505.548	267.437

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2016168 (v2.0)	Pa2g4	18813	752/415	0.3441	488/415	0.1173	266/415	2.9232	676/415	2.0286	72/415	-0.4638	438/415	-0.52

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2016168 (v2.0)	Pa2g4	18813	370/178	0.5403	230/178	0.2523	246/178	3.9786	539/178	2.9121	14/178	-1.5444	92/178	-1.536

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2016168 (v2.0)	Pa2g4	18813	85.0028	167	50.9

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2016168 (v2.0)	Pa2g4	18813	17.3424	82	21.15

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0015701 (v1.0)	4744	G0101E08-3	Mm.4742	Pa2g4	18813	U032364	NAP096718-001	Pa2g4;	TC940519,TC940517	P50580	U,F,2	3.0511	3.12	3.7224	4.2121	3.7684	4.1554	3.8426
0015701 (v1.0)	16052	K0324D01-3	Mm.4742	Pa2g4	18813	U032364	NAP096718-001	Pa2g4;	TC940517	P50580	U,F,2	3.3866	3.4007	3.5236	3.5385	3.433	3.5052	3.4187

N/A

N/A

N/A