DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2016191
GenePafah1b1
SynonymsLIS-1
Lis1
lissencephaly-1 protein
Mdsh
PAF-AH 45
Pafaha
Descriptionplatelet-activating factor acetylhydrolase, isoform 1b, subunit 1
LocusNM_013625 UCSC: chr11:74487451-74537886(-) OLP: chr11:74487451-74537886(-)
NR_037610 UCSC: chr11:74487451-74537360(-) OLP: chr11:74487451-74537360(-)
DB links


Entrez 18472
MGI 109520
Ensembl ENSMUSG00000020745
Vega OTTMUSG00000006184
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016191
(v2.0)		Pafah1b1NM_013625,NR_03761018472
56.305757.162574.706737.443342.458630.376161.369456.755337.810728.0991
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016191
(v2.0)		Pafah1b118472
726/3090.7177480/3090.5178444/3094.07171254/3093.341684/3090.1764348/309-0.4263
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2016191
(v2.0)		Pafah1b118472
470/1441.1882243/1440.6351437/1445.08921155/1444.311319/144-0.831394/144-1.2016
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016191
(v2.0)		Pafah1b118472
32.402412625.72
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2016191
(v2.0)		Pafah1b118472
11.335810311.01
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015724
(v1.0)		8175H3061A06-3Mm.56337Pafah1b118472
U033069NAP097767-001Pafah1b1;TC842099P43035U,F,23.4313.36732.65793.0162.79852.82842.8505
0015724
(v1.0)		9085H3076C06-3Mm.182249Pafah1b118472
NAP035721-1TC9376602.2482.44062.54062.54452.31612.4372.4398
0015724
(v1.0)		12681H3149G01-3Mm.102814Pafah1b118472
U044102NAP049997-1TC8336192.99972.76752.73252.84832.87512.85492.9212
0015724
(v1.0)		17217K0542H12-3Mm.56337Pafah1b118472
U033069NAP097767-001Pafah1b1;P43035U,F,22.89532.83752.35711.80832.10162.15012.3169
0015724
(v1.0)		21966L0929D12-3Mm.56337Pafah1b118472
U033069NAP097767-001Pafah1b1;P43035U,F,23.34983.41682.81432.87662.98453.07413.1995
MOE430 N/A
Agilent44K N/A
Proteome N/A