DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2017165

Gene

Ppia

Synonyms

Cphn
cyclophilin A
CyP-18
CypA

Description

peptidylprolyl isomerase A

Locus

NM_008907 UCSC: chr11:6315873-6319813(+) OLP: chr11:6315873-6319813(+)

DB links

Entrez 268373
MGI 97749

Feature

protein-coding

GO_BP

6 Terms

GO_MF

4 Terms

GO_CC

4 Terms

KEGG

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2017165 (v2.0)	Ppia	NM_008907	268373	530.09	43.3727	23.8575	276.199	1155.64	6716.51	1456.96	15.3026	822.117	8765.42

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2017165 (v2.0)	Ppia	268373	672/423	0.1546	425/423	-0.1091	256/423	2.8414	685/423	2.0203	14/423	-2.774	139/423	-2.1927

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2017165 (v2.0)	Ppia	268373	364/176	0.533	216/176	0.1783	247/176	3.9996	638/176	3.171	3/176	-3.4354	50/176	-2.38

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2017165 (v2.0)	Ppia	268373	52.2747	145	36.05

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2017165 (v2.0)	Ppia	268373	15.7586	100	15.76

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0016675 (v1.0)	4866	G0110B10-3	Mm.5246	Ppia	19034	U012297	NAP094243-001		TC866007,TC835369,TC835340,TC835336,TC835334,TC835333	P17742	U,F,2	2.8558	3.1211	3.2685	3.3224	3.2196	3.4409	3.4744
0016675 (v1.0)	22328	L0957D01-3	Mm.5246	Ppia	19034							2.7088	2.3782	2.0781	2.7067	3.0592	2.9977	3.0056

N/A

N/A

N/A