DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:2017654

Gene

Pten

Synonyms

MMAC1
TEP1

Description

phosphatase and tensin homolog

Locus

NM_008960 UCSC: chr19:32832067-32900650(+) OLP: chr19:32832067-32900650(+)

DB links

Entrez 19211
MGI 109583
Ensembl ENSMUSG00000013663
Vega OTTMUSG00000021203

Feature

protein-coding

GO_BP

75 Terms

GO_MF

17 Terms

GO_CC

12 Terms

KEGG

11 Terms

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	ESC_FPKM	MEF_FPKM	p1C_FPKM	p4C_FPKM	iPSC_FPKM
2017654 (v2.0)	Pten	NM_008960	19211	13.3991	8.00985	16.9919	71.1356	57.3873	9.28604	78.3632	14.2791	51.0342	10.8682

SPR_Histone_Erkek_5KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2017654 (v2.0)	Pten	19211	790/365	0.5998	453/365	0.1949	530/365	4.0947	1346/365	3.2052	50/365	-0.7979	318/365	-0.7953

SPR_Histone_Erkek_2KaroundTSS

DBTMEE	Gene	Entrez	H3.3_1_ChIP/Input	H3.3_1(Enrich; log2)	H3.3_2_ChIP/Input	H3.3_2(Enrich; log2)	H3K4me3_1_ChIP/Input	H3K4me3_1(Enrich; log2)	H3K4me3_2_ChIP/Input	H3K4me3_2(Enrich; log2)	H3K27me3_1_ChIP/Input	H3K27me3_1(Enrich; log2)	H3K27me3_2_ChIP/Input	H3K27me3_2(Enrich; log2)
2017654 (v2.0)	Pten	19211	494/171	1.0134	204/171	0.1376	490/171	5.0239	1128/171	4.0332	5/171	-2.8098	82/171	-1.6417

SPR_Methy_Kobayashi_5KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2017654 (v2.0)	Pten	19211	48.915	227	21.55

SPR_Methy_Kobayashi_2KaroundTSS

DBTMEE	Gene	Entrez	Total_mC_levels	Number_of_mCs	Averaged_Methylation_level
2017654 (v2.0)	Pten	19211	9.8294	163	6.03

SOLiD_OocyteTo4C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno1C_FPKM_gene_guided

N/A

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

N/A

SOLiD_Partheno4C_FPKM_gene_guided

N/A

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

N/A

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0017151 (v1.0)	9759	H3086A07-3	Mm.1591	Pten	19211	U019374	NAP120660-001	Pten;	TC898006	O08586	U,F,2	3.1484	3.2142	3.4424	3.735	3.1258	3.2591	3.1445
0017151 (v1.0)	20071	L0518H05-3	Mm.1591	Pten	19211							3.1083	3.091	3.3303	3.6871	2.9998	3.1475	3.025
0017151 (v1.0)	20271	L0534D06-3	Mm.1591	Pten	19211							3.9739	4.265	4.7266	4.4904	4.0105	4.3187	4.0593
0017151 (v1.0)	21610	L0863G12-3	Mm.1591	Pten	19211	U019374	NAP120660-001	Pten;	TC898006	O08586	U,F,2	2.4729	2.5592	2.3062	2.3524	2.2445	2.3491	2.1903

N/A

N/A

N/A