DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2019366
GeneSin3a
SynonymsmSin3A
Sin3
Descriptiontranscriptional regulator, SIN3A (yeast)
LocusNM_001110351 UCSC: chr9:56919847-56976175(+) OLP: chr9:56919847-56976175(+)
NM_001110350 UCSC: chr9:56924183-56976175(+) OLP: chr9:56924183-56976175(+)
NM_011378 UCSC: chr9:56924183-56976175(+) OLP: chr9:56924183-56976175(+)
DB links


Entrez 20466
MGI 107157
Ensembl ENSMUSG00000042557
Vega OTTMUSG00000036738
Featureprotein-coding
GO_BP
  •   25 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      in utero embryonic development (GO:0001701)
      activation of innate immune response (GO:0002218)
      positive regulation of defense response to virus by host (GO:0002230)
      hematopoietic progenitor cell differentiation (GO:0002244)
      DNA replication (GO:0006260)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      protein deacetylation (GO:0006476)
      aging (GO:0007568)
      response to organonitrogen compound (GO:0010243)
      positive regulation of G2/M transition of mitotic cell cycle (GO:0010971)
      positive regulation of chromatin silencing (GO:0031937)
      cellular protein localization (GO:0034613)
      negative regulation of circadian rhythm (GO:0042754)
      negative regulation of apoptotic process (GO:0043066)
      regulation of transcription from RNA polymerase II promoter in response to oxidative stress (GO:0043619)
      negative regulation of transcription, DNA-templated (GO:0045892)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      response to methylglyoxal (GO:0051595)
      cellular response to glucose stimulus (GO:0071333)
      negative regulation of protein localization to nucleus (GO:1900181)
      negative regulation of histone H3-K27 acetylation (GO:1901675)
      negative regulation of transcription regulatory region DNA binding (GO:2000678)
GO_MF
  •   12 Terms
      transcription regulatory region sequence-specific DNA binding (GO:0000976)
      RNA polymerase II activating transcription factor binding (GO:0001102)
      RNA polymerase II repressing transcription factor binding (GO:0001103)
      RNA polymerase II transcription corepressor activity (GO:0001106)
      DNA binding (GO:0003677)
      chromatin binding (GO:0003682)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      transcription corepressor activity (GO:0003714)
      protein binding (GO:0005515)
      transcription factor binding (GO:0008134)
      protein complex binding (GO:0032403)
      protein deacetylase activity (GO:0033558)
GO_CC
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019366
(v2.0)		Sin3aNM_001110350,NM_001110351,NM_01137820466
9.86317139.371276.19281.769138.193614.353516.1321220.41830.743815.2665
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019366
(v2.0)		Sin3a20466
875/4390.4813551/4390.2112435/4393.55181482/4393.0793227/4391.0991166/4390.8085
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2019366
(v2.0)		Sin3a20466
333/1630.5152212/1630.2615184/1633.6801613/1633.222563/1630.6727328/1630.4073
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019366
(v2.0)		Sin3a20466
22.71192768.23
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2019366
(v2.0)		Sin3a20466
5.4281453.74
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0018825
(v1.0)		7834H3054G05-3Mm.15755Sin3a20466
U010537NAP097181-001Sin3a;TC794400,TC794397Q60520U,F,23.91793.8123.543.5812.77032.95452.8089
0018825
(v1.0)		9792H3086E04-3Sin3a20466
U010537NAP079566-1Sin3a;TC794398,TC794397Q60520U,F,23.55613.46153.10053.02512.63572.79942.7039
0018825
(v1.0)		16901K0515H06-3Mm.15755Sin3a20466
U010537NAP097180-001Sin3a;TC794397Q60520U,F,23.92224.09043.61133.57373.30383.41823.3057
MOE430 N/A
Agilent44K N/A
Proteome N/A