DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0015960
GenePdap1
SynonymsHASPP28
PAP1
Desc.PDGFA associated protein 1
LocusNM_001033313 chr5:145889639-145900958(-)
DB links


Entrez 231887
MGI 2448536
Ensembl ENSMUSG00000029623
Vega OTTMUSG00000022988
Featureprotein-coding
GO(BP)
  •   1 Terms
      platelet-derived growth factor receptor signaling pathway (GO:0048008)
GO(MF)
  •   1 Terms
      platelet-derived growth factor binding (GO:0048407)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2016433
(v2.0)
Pdap1NM_001033313231887
40.535415.3988.0172229.737945.14562.312339.57127.4754843.482779.8486
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0015960
(v1.0)
Pdap1231887
MGA0.98389
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016433
(v2.0)
Pdap1231887
952/5010.4126697/5010.35951981/5015.55065250/5014.713815/501-2.922884/501-3.1528
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2016433
(v2.0)
Pdap1231887
415/1970.5597339/1970.66421066/1975.95212703/1975.09186/197-2.787140/197-2.8531
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016433
(v2.0)
Pdap1231887
63.95214045.68
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2016433
(v2.0)
Pdap1231887
22.70879523.9
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015960
(v1.0)
Pdap1NM_001033313231887
16.00745.5594522.131431.266228.1674
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0015960
(v1.0)
Pdap1NM_001033313231887
42.834811.290152.486678.058163.1801
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0015960
(v1.0)
Pdap1NM_001033313231887
16.737214.82426.06548
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0015960
(v1.0)
Pdap1NM_001033313231887
16.33725.503625.52339
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0015960
(v1.0)
Pdap1NM_001033313231887
4.269815.22656
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0015960
(v1.0)
Pdap1NM_001033313231887
16.74714.62126.05787
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0015960
(v1.0)
Pdap1NM_001033313231887
20.490230.188730.1408
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0015960
(v1.0)
Pdap1NM_001033313231887
102.316108.512
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0015960
(v1.0)
Pdap1NM_001033313231887
38.65199.69486
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0015960
(v1.0)
Pdap1NM_001033313231887
7.169839.69415
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0015960
(v1.0)
318C0100E08-3Mm.3360LOC231887231887
U026941NAP006714-001TC908985U,F,23.52273.54153.5743.6683.87043.9123.9311
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0015960
(v1.0)
1434019_atMm.188851Pdap1NM_001033313.3231887
223.975219.5255.325444.6442.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0015960
(v1.0)
A_51_P202430Pdap1BC007162231887
11P0.6820.162P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0015960
(v1.0)
Pdap1231887
210210