DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0016190
GenePhf8
Synonyms
DescriptionPHD finger protein 8
LocusNM_177201 UCSC: chrX:147955215-148060376(+) OLP: chrX:147955215-148060376(+)
NM_001113354 UCSC: chrX:147955215-148068400(+) OLP: chrX:147955215-148068400(+)
DB links


Entrez 320595
MGI 2444341
Ensembl ENSMUSG00000041229
Vega OTTMUSG00000017224
Featureprotein-coding
GO_BP
  •   9 Terms
      G1/S transition of mitotic cell cycle (GO:0000082)
      histone H3-K9 demethylation (GO:0033169)
      histone H4-K20 demethylation (GO:0035574)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase I promoter (GO:0045943)
      oxidation-reduction process (GO:0055114)
      negative regulation of chromatin silencing at rDNA (GO:0061188)
      histone H3-K36 demethylation (GO:0070544)
      histone H3-K27 demethylation (GO:0071557)
GO_MF
  •   10 Terms
      chromatin binding (GO:0003682)
      iron ion binding (GO:0005506)
      zinc ion binding (GO:0008270)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      histone demethylase activity (GO:0032452)
      histone demethylase activity (H3-K9 specific) (GO:0032454)
      methylated histone residue binding (GO:0035064)
      histone demethylase activity (H4-K20 specific) (GO:0035575)
      histone demethylase activity (H3-K36 specific) (GO:0051864)
      histone demethylase activity (H3-K27 specific) (GO:0071558)
GO_CC
KEGG
Ver2_FPKM see DBTMEE:2016666 (v2.0)
SPR_Histone_Erkek_5KaroundTSS N/A
SPR_Histone_Erkek_2KaroundTSS N/A
SPR_Methy_Kobayashi_5KaroundTSS N/A
SPR_Methy_Kobayashi_2KaroundTSS N/A
SOLiD_OocyteTo4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0016190
(v1.0)		Phf8NM_001113354,NM_177201320595
31.760334.902617.08225.416743.97253
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0016190
(v1.0)		Phf8NM_001113354,NM_177201320595
33.20835.3145438.0795
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0016190
(v1.0)		Phf8NM_001113354,NM_177201320595
32.414634.552238.2606
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0016190
(v1.0)		Phf8NM_001113354,NM_177201320595
33.22765.2417541.9629
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0016190
(v1.0)		Phf8NM_001113354,NM_177201320595
15.81555.230086.49677
Illumina_Oo_2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0016190
(v1.0)		Phf8NM_001113354,NM_177201320595
28.32839.46506
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0016190
(v1.0)		Phf8NM_001113354,NM_177201320595
1.241461.26357
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0016190
(v1.0)		1460398_atMm.17156Phf8NM_001113354.1,NM_177201.5320595
231.025257.175100.92583.07560.425
Agilent44K
DBTMEEProbe_IDGeneAccEntrezOo1_xFoldOo1_pValOo1_FlagOo2_xFoldOo2_pValOo2_Flag
0016190
(v1.0)		A_51_P258698Phf8AK122447320595
11P0.5540.113P
Proteome N/A