DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019549
GeneSnw1
SynonymsNCoA-62
Skiip
SKIP
SNW1
DescriptionSNW domain containing 1
LocusNM_025507 UCSC: chr12:88790860-88813249(-) OLP: chr12:88790860-88813249(-)
DB links


Entrez 66354
MGI 1913604
Ensembl ENSMUSG00000021039
Featureprotein-coding
GO_BP
  •   18 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      mRNA splicing, via spliceosome (GO:0000398)
      mRNA processing (GO:0006397)
      RNA splicing (GO:0008380)
      positive regulation of transforming growth factor beta receptor signaling pathway (GO:0030511)
      skeletal muscle cell differentiation (GO:0035914)
      intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (GO:0042771)
      positive regulation by host of viral transcription (GO:0043923)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of mRNA splicing, via spliceosome (GO:0048026)
      retinoic acid receptor signaling pathway (GO:0048384)
      regulation of retinoic acid receptor signaling pathway (GO:0048385)
      positive regulation of neurogenesis (GO:0050769)
      positive regulation of histone H3-K4 methylation (GO:0051571)
      regulation of vitamin D receptor signaling pathway (GO:0070562)
      positive regulation of vitamin D receptor signaling pathway (GO:0070564)
      cellular response to retinoic acid (GO:0071300)
GO_MF
GO_CC
KEGG
Ver2_FPKM see DBTMEE:2020126 (v2.0)
SPR_Histone_Erkek_5KaroundTSS N/A
SPR_Histone_Erkek_2KaroundTSS N/A
SPR_Methy_Kobayashi_5KaroundTSS N/A
SPR_Methy_Kobayashi_2KaroundTSS N/A
SOLiD_OocyteTo4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019549
(v1.0)		Snw1NM_02550766354
99.854982.039938.461439.406432.5205
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019549
(v1.0)		Snw1NM_02550766354
104.4078.8950989.5073
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019549
(v1.0)		Snw1NM_02550766354
101.91281.216282.5603
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019549
(v1.0)		Snw1NM_02550766354
104.4688.7732690.5493
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019549
(v1.0)		Snw1NM_02550766354
35.609338.048534.6676
Illumina_Oo_2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019549
(v1.0)		Snw1NM_02550766354
43.04649.15177
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019549
(v1.0)		Snw1NM_02550766354
13.504220.0093
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019549
(v1.0)		1494C0218H03-3Mm.27094Skiip66354
3.97934.02074.17854.05713.96914.0764.0499
0019549
(v1.0)		13598J0058H02-3Mm.27094Skiip66354
U034214NAP121223-001TC805067Q9CSN12.90852.95432.96572.84882.8213.00152.8877
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019549
(v1.0)		1429002_atMm.271174Snw1NM_025507.266354
586.525445.475537.45525.625594.9
Agilent44K
DBTMEEProbe_IDGeneAccEntrezOo1_xFoldOo1_pValOo1_FlagOo2_xFoldOo2_pValOo2_Flag
0019549
(v1.0)		A_51_P100787SkiipAK00921866354
11P0.5370.104P
0019549
(v1.0)		A_52_P662695SkiipNM_02550766354
11P0.8620.377P
Proteome N/A