DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2009808
GeneHdac1
SynonymsHD1
MommeD5
RPD3
Descriptionhistone deacetylase 1
LocusNM_008228 UCSC: chr4:129193348-129219890(-) OLP: chr4:129193348-129219890(-)
DB links


Entrez 433759
MGI 108086
Ensembl ENSMUSG00000028800
Vega OTTMUSG00000009661
Featureprotein-coding
GO_BP
  •   36 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-templated (GO:0006351)
      regulation of transcription, DNA-templated (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      protein deacetylation (GO:0006476)
      endoderm development (GO:0007492)
      circadian rhythm (GO:0007623)
      positive regulation of cell proliferation (GO:0008284)
      negative regulation of cell proliferation (GO:0008285)
      epidermal cell differentiation (GO:0009913)
      positive regulation of receptor biosynthetic process (GO:0010870)
      chromatin modification (GO:0016568)
      histone deacetylation (GO:0016575)
      hippocampus development (GO:0021766)
      neuron differentiation (GO:0030182)
      circadian regulation of gene expression (GO:0032922)
      cellular response to oxidative stress (GO:0034599)
      odontogenesis of dentin-containing tooth (GO:0042475)
      embryonic digit morphogenesis (GO:0042733)
      ATP-dependent chromatin remodeling (GO:0043044)
      negative regulation of apoptotic process (GO:0043066)
      negative regulation of neuron apoptotic process (GO:0043524)
      negative regulation by host of viral transcription (GO:0043922)
      negative regulation of transcription, DNA-templated (GO:0045892)
      positive regulation of transcription, DNA-templated (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      rhythmic process (GO:0048511)
      positive regulation of oligodendrocyte differentiation (GO:0048714)
      negative regulation of androgen receptor signaling pathway (GO:0060766)
      hair follicle placode formation (GO:0060789)
      eyelid development in camera-type eye (GO:0061029)
      fungiform papilla formation (GO:0061198)
      histone H3 deacetylation (GO:0070932)
      histone H4 deacetylation (GO:0070933)
      negative regulation of canonical Wnt signaling pathway (GO:0090090)
      negative regulation of intrinsic apoptotic signaling pathway (GO:2001243)
GO_MF
  •   29 Terms
      transcription regulatory region sequence-specific DNA binding (GO:0000976)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978)
      RNA polymerase II distal enhancer sequence-specific DNA binding (GO:0000980)
      core promoter binding (GO:0001047)
      RNA polymerase II repressing transcription factor binding (GO:0001103)
      RNA polymerase II transcription corepressor activity (GO:0001106)
      DNA binding (GO:0003677)
      chromatin binding (GO:0003682)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      transcription corepressor activity (GO:0003714)
      histone deacetylase activity (GO:0004407)
      protein binding (GO:0005515)
      transcription factor binding (GO:0008134)
      hydrolase activity (GO:0016787)
      deacetylase activity (GO:0019213)
      enzyme binding (GO:0019899)
      histone deacetylase activity (H3-K14 specific) (GO:0031078)
      nucleosomal DNA binding (GO:0031492)
      NAD-dependent histone deacetylase activity (H3-K14 specific) (GO:0032041)
      histone deacetylase activity (H3-K9 specific) (GO:0032129)
      protein complex binding (GO:0032403)
      protein deacetylase activity (GO:0033558)
      activating transcription factor binding (GO:0033613)
      histone deacetylase activity (H4-K16 specific) (GO:0034739)
      Krueppel-associated box domain binding (GO:0035851)
      histone deacetylase binding (GO:0042826)
      NAD-dependent histone deacetylase activity (H3-K9 specific) (GO:0046969)
      NAD-dependent histone deacetylase activity (H4-K16 specific) (GO:0046970)
      NAD-dependent histone deacetylase activity (H3-K18 specific) (GO:0097372)
GO_CC
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009808
(v2.0)		Hdac1NM_008228433759
32.37363.521736.66749153.094224.179173.12155.25794.06728227.066176.942
SPR_Histone_Erkek_5KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2009808
(v2.0)		Hdac1433759
612/4220.0234391/422-0.2257131/4221.8835344/4221.032133/422-1.59219/422-1.5391
SPR_Histone_Erkek_2KaroundTSS
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2009808
(v2.0)		Hdac1433759
311/1700.3567181/170-0.0256120/1703.0111317/1702.21369/170-2.064659/170-2.098
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2009808
(v2.0)		Hdac1433759
63.319613447.25
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2009808
(v2.0)		Hdac1433759
14.73848118.2
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0009925
(v1.0)		11397H3114E11-3Hdac115181
U025556NAP093601-001TC814268,TC814267,TC814262,TC814261O09106U,F,22.08312.56572.89893.53653.51833.73093.5246
MOE430 N/A
Agilent44K N/A
Proteome N/A