DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:2013745
GeneMrpl40
SynonymsNlvcf
Descriptionmitochondrial ribosomal protein L40
LocusNM_010922 UCSC: chr16:18872111-18876730(-) OLP: chr16:18872111-18876730(-)
DB links


Entrez 18100
MGI 1332635
Ensembl ENSMUSG00000022706
Vega OTTMUSG00000026128
Featureprotein-coding
GO_BP
GO_MF
GO_CC
KEGG
Ver2_FPKM
Log10 (FPKM+1)
1.525
SPR
1.655
Oo
1.558
1C
1.912
2C
1.892
4C
1.745
ESC
1.325
MEF
1.532
p1C
1.934
p4C
1.847
iPSC
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2013745
(v2.0)		Mrpl40NM_01092218100
32.527944.203135.160880.724676.974454.651620.11333.034684.953669.3858
SPR_Histone_Erkek_5KaroundTSS
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
0.153
H3.3
Rep.1
0.004
H3.3
Rep.2
2.407
H3K4me3
Rep.1
1.22
H3K4me3
Rep.2
-3.069
H3K27me3
Rep.1
-2.602
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2013745
(v2.0)		Mrpl4018100
714/4500.1529489/4500.0037201/4502.4071418/4501.220312/450-3.0688111/450-2.6024
SPR_Histone_Erkek_2KaroundTSS
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
0.589
H3.3
Rep.1
0.309
H3.3
Rep.2
3.652
H3K4me3
Rep.1
2.485
H3K4me3
Rep.2
-2.66
H3K27me3
Rep.1
-2.088
H3K27me3
Rep.2
DBTMEEGeneEntrezH3.3_1_ChIP/InputH3.3_1(Enrich; log2)H3.3_2_ChIP/InputH3.3_2(Enrich; log2)H3K4me3_1_ChIP/InputH3K4me3_1(Enrich; log2)H3K4me3_2_ChIP/InputH3K4me3_2(Enrich; log2)H3K27me3_1_ChIP/InputH3K27me3_1(Enrich; log2)H3K27me3_2_ChIP/InputH3K27me3_2(Enrich; log2)
2013745
(v2.0)		Mrpl4018100
387/1800.5888242/1800.3093198/1803.6517405/1802.48476/180-2.659763/180-2.0876
SPR_Methy_Kobayashi_5KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2013745
(v2.0)		Mrpl4018100
41.712813231.6
SPR_Methy_Kobayashi_2KaroundTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level
2013745
(v2.0)		Mrpl4018100
10.865110010.87
SOLiD_OocyteTo4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided N/A
SOLiD_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo_2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided N/A
NIA60mer
DBTMEEArray_Feature_NumberOligo_Parent_CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0013292
(v1.0)		1390C0205D06-3Mm.20918Mrpl4018100
U036866NAP010185-001TC936201Q9Z2Q5U,F,23.57513.85613.94774.44193.89124.05983.8458
MOE430 N/A
Agilent44K N/A
Proteome N/A