| Gene | Smarca5 |
| Synonyms | MommeD4
Snf2h |
| Description | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 |
| Locus | NM_053124 UCSC: chr8:83223843-83263358(-) OLP: chr8:83223843-83263358(-)
|
| DB links |
Entrez 93762
MGI 1935129
|
| Feature | protein-coding |
| GO_BP |
-
 12 Terms
|
| GO_MF |
-
13 Terms
|
| GO_CC |
-
7 Terms
|
| KEGG | |
| Ver2_FPKM |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | ESC_FPKM | MEF_FPKM | p1C_FPKM | p4C_FPKM | iPSC_FPKM |
|---|
2019867
(v2.0) | Smarca5 | NM_053124 | 93762
| 6.76856 | 24.1838 | 30.699 | 99.3742 | 116.85 | 48.4507 | 23.0432 | 24.4717 | 101.659 | 37.9823 |
|
| SPR_Histone_Erkek_5KaroundTSS |
Enrichment of Histone Variant and Modification (+/- 5Kb from TSS)
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2019867
(v2.0) | Smarca5 | 93762
| 610/348 | 0.2961 | 453/348 | 0.2635 | 192/348 | 2.7011 | 588/348 | 2.0801 | 36/348 | -1.1929 | 316/348 | -0.7358 |
|
| SPR_Histone_Erkek_2KaroundTSS |
Enrichment of Histone Variant and Modification (+/- 2Kb from TSS)
| DBTMEE | Gene | Entrez | H3.3_1_ChIP/Input | H3.3_1(Enrich; log2) | H3.3_2_ChIP/Input | H3.3_2(Enrich; log2) | H3K4me3_1_ChIP/Input | H3K4me3_1(Enrich; log2) | H3K4me3_2_ChIP/Input | H3K4me3_2(Enrich; log2) | H3K27me3_1_ChIP/Input | H3K27me3_1(Enrich; log2) | H3K27me3_2_ChIP/Input | H3K27me3_2(Enrich; log2) |
|---|
2019867
(v2.0) | Smarca5 | 93762
| 341/130 | 0.8734 | 227/130 | 0.6838 | 187/130 | 4.0045 | 565/130 | 3.4259 | 7/130 | -2.0101 | 49/130 | -1.9741 |
|
| SPR_Methy_Kobayashi_5KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2019867
(v2.0) | Smarca5 | 93762
| 36.9775 | 150 | 24.65 |
|
| SPR_Methy_Kobayashi_2KaroundTSS |
| DBTMEE | Gene | Entrez | Total_mC_levels | Number_of_mCs | Averaged_Methylation_level |
|---|
2019867
(v2.0) | Smarca5 | 93762
| 10.6578 | 122 | 8.74 |
|
| SOLiD_OocyteTo4C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno1C_FPKM_gene_guided |
N/A |
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
N/A |
| SOLiD_Partheno4C_FPKM_gene_guided |
N/A |
| Illumina_Oo_2C_FPKM_gene_guided |
N/A |
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
N/A |
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0019309
(v1.0) | 5110 | AA190286.1 | Mm.133447 | Smarca5 | 93762
| U030004 | NAP000002-009 | Smarca5; | TC904326 | | U,F,2 | 3.9618 | 3.9833 | 4.1292 | 4.4996 | 4.5076 | 4.4115 | 4.384 |
0019309
(v1.0) | 5178 | AA675554.1 | Mm.133447 | Smarca5 | 93762
| U030004 | NAP000002-009 | | TC904326 | | U,F,2 | 3.226 | 3.0296 | 3.0918 | 3.4194 | 2.8333 | 3.1975 | 2.9911 |
0019309
(v1.0) | 8168 | H3061A01-3 | Mm.133447 | Smarca5 | 93762
| U030004 | NAP100298-001 | Smarca5; | TC904326 | | U,F,2 | 2.6439 | 2.6061 | 2.6546 | 2.8331 | 2.5717 | 2.7752 | 2.6581 |
|
| MOE430 |
N/A |
| Agilent44K |
N/A |
| Proteome |
N/A |
